Evidence map›Paper›PMID 27550368›Full record

ArticleVirus genes2016

Multiple virus infection in a single strain of Fusarium poae shown by deep sequencing.

Hideki Osaki, Atsuko Sasaki, Koji Nomiyama, Keisuke Tomioka

Abstract read
PubMed Publisher
In one paragraph

Article in Virus genes, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Transmission of mycoviruses: new possibilities.Frontiers in microbiology · 2024
    Article
  15. Article
  16. Mycovirus-induced hypovirulence in notorious fungi Sclerotinia: a comprehensive review.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Review
  17. Article
  18. Article
  19. Diversity of Mycoviruses Present in Strains of BinucleateJournal of fungi (Basel, Switzerland) · 2023
    Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Hideki OsakiNARO Institute of Fruit Tree and Tea Science, 2-1 Fujimoto, Tsukuba, Ibaraki, 305-8605, Japan. hideki@affrc.go.jp.
Atsuko SasakiNARO Institute of Fruit Tree and Tea Science, 2-1 Fujimoto, Tsukuba, Ibaraki, 305-8605, Japan.
Koji NomiyamaNARO Western Region Agricultural Research Center, 6-12-1 Nishifukatsu, Fukuyama, Hiroshima, 721-8514, Japan.
Keisuke TomiokaNARO Western Region Agricultural Research Center, 6-12-1 Nishifukatsu, Fukuyama, Hiroshima, 721-8514, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many bands were detected on an electrophoretic profile of double-stranded (ds) RNA preparation from a single strain of Fusarium poae isolated from wheat. When the purified dsRNA sample was deep-sequenced by a next-generation sequencer, sixteen virus-like assembled contigs with predicted amino acid sequences showing homologies to respective viral RNA-dependent RNA polymerases (RdRps) were found by BLAST analysis. Fourteen out of sixteen sequences showed homologies to RdRps of known mycoviruses, that is, four mitoviruses, two narnaviruses, two partitiviruses, an alternavirus, a fusarivirus, a hypovirus, a victorivirus, and two unclassified mycoviruses, Sclerotinia sclerotiorum dsRNA mycovirus-L and Aspergillus foetidus slow virus 2, respectively. The other two putative viral RdRp sequences showed homologies to those of members of negative-stranded RNA viruses, the Ophiovirus and the Phlebovirus respectively, which mycoviruses had been not ever assigned to. Based on genome structure and phylogenetic analysis, both viruses were thought to be members of novel respective negative-stranded RNA virus groups. The presences of all sixteen viral RdRp sequences identified by BLAST analysis were confirmed by sequencing RT-PCR products generated from the starting dsRNA material using primers designed from the de novo assembled sequences of respective putative mycoviruses. Since the single strain of F. poae was considered to be multiply infected with mycoviruses from novel taxonomical groups in addition to many common mycoviruses, the RNA virome of the strain was found to be highly diverse.

Indexed as

High-Throughput Nucleotide SequencingComputational BiologyFungal VirusesFusariumGenome, ViralPhylogenyRNA, Double-StrandedRNA, ViralRNA VirusesSequence Analysis, DNATriticumRNA, Double-StrandedRNA, ViralDouble-stranded RNAFusarium poaeMultiple infectionMycovirusRNA virome

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.