Evidence map›Paper›PMID 27549137›Full record

ArticleParasites & vectors2016

DNA barcoding and surveillance sampling strategies for Culicoides biting midges (Diptera: Ceratopogonidae) in southern India.

Lara E Harrup, Swathi Laban, Bethan V Purse, Yarabolu Krishnamohan Reddy, Yella Narasimha Reddy, Sonnahallipura Munivenkatappa Byregowda, Naveen Kumar, Kondappa Muniramaiah Purushotham, Shrikant Kowalli, Minakshi Prasad and 10 more

Abstract read
In one paragraph

Article in Parasites & vectors, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
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  4. Characterisation of the virome ofThe Journal of general virology · 2025
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  7. Abundance and Diversity ofTransboundary and emerging diseases · 2023
    Article
  8. Natural infection withFrontiers in microbiology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Lara E HarrupVector-borne Viral Diseases Programme, The Pirbright Institute, Ash Road, Woking, Surrey, GU24 0NF, UK. lara.harrup@pirbright.ac.uk.
Swathi LabanVaccine Research Centre-Viral Vaccines, Centre for Animal Health Studies, Tamil Nadu Veterinary and Animal Sciences University, Madhavaram Milk Colony, Chennai, 600 051, India.
Bethan V PurseCentre for Ecology and Hydrology, Benson Lane, Crowmarsh Gifford, Wallingford, Oxfordshire, OX10 8BB, UK.
Yarabolu Krishnamohan ReddyVaccine Research Centre-Viral Vaccines, Centre for Animal Health Studies, Tamil Nadu Veterinary and Animal Sciences University, Madhavaram Milk Colony, Chennai, 600 051, India.
Yella Narasimha ReddyDepartment of Veterinary Microbiology, College of Veterinary Science, Rajendranagar, Hyderabad, 500030, Andhra Pradesh, India.
Sonnahallipura Munivenkatappa ByregowdaInstitute of Animal Health and Veterinary Biologicals, Hebbal, 560024, Bengaluru, India.
Naveen KumarInstitute of Animal Health and Veterinary Biologicals, Hebbal, 560024, Bengaluru, India.
Kondappa Muniramaiah PurushothamInstitute of Animal Health and Veterinary Biologicals, Hebbal, 560024, Bengaluru, India.
Shrikant KowalliInstitute of Animal Health and Veterinary Biologicals, Hebbal, 560024, Bengaluru, India.
Minakshi PrasadDepartment of Animal Biotechnology, Lala Lajpat Rai University of Veterinary and Animal Sciences, College of Veterinary Science, Hisar, 125004, Haryana, India.
Gaya PrasadDepartment of Animal Biotechnology, Lala Lajpat Rai University of Veterinary and Animal Sciences, College of Veterinary Science, Hisar, 125004, Haryana, India.
Alison A BettisDepartment of Disease Control, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK.
Rien De KeyserDepartment of Disease Control, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK.
James LoganDepartment of Disease Control, London School of Hygiene and Tropical Medicine, London, WC1E 7HT, UK.
Claire GarrosCirad, UMR15 CMAEE, F-34398, Montpellier, France.
David GopurenkoNSW Department of Primary Industries, PMB, Wagga Wagga Agricultural Institute, Wagga Wagga, NSW, 2650, Australia.
Glenn BellisDepartment of Agriculture, Fisheries and Forestry, Winnellie, Australia.
Karien LabuschagneOnderstepoort Veterinary Institute, Agricultural Research Council-Onderstepoort Veterinary Institute, PVVD, ZA-0110, Onderstepoort, South Africa.
Bruno MathieuInstitut de Parasitologie et de Pathologie tropicale de Strasbourg (IPPTS), EA7292, Faculté de Médecine, 3 rue Koeberlé, F-67000, Strasbourg, France.
Simon CarpenterVector-borne Viral Diseases Programme, The Pirbright Institute, Ash Road, Woking, Surrey, GU24 0NF, UK.

Funding

Biotechnology and Biological Sciences Research Council BB/H009167/1Biotechnology and Biological Sciences Research Council BB/H009205/1Biotechnology and Biological Sciences Research Council BB/H009493/1Biotechnology and Biological Sciences Research Council BB/K021214/1
6 · The paper itself

Abstract

backgroundCulicoides spp. biting midges transmit bluetongue virus (BTV), the aetiological agent of bluetongue (BT), an economically important disease of ruminants. In southern India, hyperendemic outbreaks of BT exert high cost to subsistence farmers in the region, impacting on sheep production. Effective Culicoides spp. monitoring methods coupled with accurate species identification can accelerate responses for minimising BT outbreaks. Here, we assessed the utility of sampling methods and DNA barcoding for detection and identification of Culicoides spp. in southern India, in order to provide an informed basis for future monitoring of their populations in the region.

methodsCulicoides spp. collected from Tamil Nadu and Karnataka were used to construct a framework for future morphological identification in surveillance, based on sequence comparison of the DNA barcode region of the mitochondrial cytochrome c oxidase I (COI) gene and achieving quality standards defined by the Barcode of Life initiative. Pairwise catches of Culicoides spp. were compared in diversity and abundance between green (570 nm) and ultraviolet (UV) (390 nm) light emitting diode (LED) suction traps at a single site in Chennai, Tamil Nadu over 20 nights of sampling in November 2013.

resultsDNA barcode sequences of Culicoides spp. were mostly congruent both with existing DNA barcode data from other countries and with morphological identification of major vector species. However, sequence differences symptomatic of cryptic species diversity were present in some groups which require further investigation. While the diversity of species collected by the UV LED Center for Disease Control (CDC) trap did not significantly vary from that collected by the green LED CDC trap, the UV CDC significantly outperformed the green LED CDC trap with regard to the number of Culicoides individuals collected.

conclusionsMorphological identification of the majority of potential vector species of Culicoides spp. samples within southern India appears relatively robust; however, potential cryptic species diversity was present in some groups requiring further investigation. The UV LED CDC trap is recommended for surveillance of Culicoides in southern India.

Indexed as

DNA Barcoding, TaxonomicAnimal DistributionAnimalsCeratopogonidaeDNAIndiaPhylogenyPopulation SurveillanceSpecies SpecificityDNAArbovirusBluetongue virusBOLDCOICulicoidesDNA barcodeLEDSurveillance

Identifiers

PMID27549137
PMCPMC4994320

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.