GuidelineFEMS microbiology ecology2016
Soil and leaf litter metaproteomics-a brief guideline from sampling to understanding.
Guideline in FEMS microbiology ecology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
15 citing papers in PubMed.
- Challenges and Future Directives of Synthetic Biology in Engineering Plant-Microbe Partnerships for Sustainable Agriculture.Biotechnology and bioengineering · 2026Review
- Microbial mechanisms as tools for monitoring and treating emerging contaminants in urban pollution: an overview.Archives of microbiology · 2026Review
- The microbiologist's guide to metaproteomics.iMeta · 2025Review
- Metaproteomics in the One Health framework for unraveling microbial effectors in microbiomes.Microbiome · 2025Review
- ChipFilter: Microfluidic-Based Comprehensive Sample Preparation Methodology for Microbial Consortia.Journal of proteome research · 2024Article
- Potential of Meta-Omics to Provide Modern Microbial Indicators for Monitoring Soil Quality and Securing Food Production.Frontiers in microbiology · 2022Review
- Soil Metaproteomics for the Study of the Relationships Between Microorganisms and Plants: A Review of Extraction Protocols and Ecological Insights.International journal of molecular sciences · 2020Review
- A complete and flexible workflow for metaproteomics data analysis based on MetaProteomeAnalyzer and Prophane.Nature protocols · 2020Article
- Targeted Metagenomics of Retting in Flax: The Beginning of the Quest to Harness the Secret Powers of the Microbiota.Frontiers in genetics · 2020Review
- A Small Effort for Researchers, a Big Gain for Soil Metaproteomics.Frontiers in microbiology · 2020Article
- A Robust and Universal Metaproteomics Workflow for Research Studies and Routine Diagnostics Within 24 h Using Phenol Extraction, FASP Digest, and the MetaProteomeAnalyzer.Frontiers in microbiology · 2019Article
- Multi-omic Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes.Applied and environmental microbiology · 2018Article
- Recent Insights on Biological and Ecological Aspects of Ectomycorrhizal Fungi and Their Interactions.Frontiers in microbiology · 2018Review
- Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach.Scientific reports · 2017Article
- Simple discovery of bacterial biocatalysts from environmental samples through functional metaproteomics.Microbiome · 2017Article
Corrections and comments
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Authors and funding
4 authors.
Funding
Abstract
The increasing application of soil metaproteomics is providing unprecedented, in-depth characterization of the composition and functionality of in situ microbial communities. Despite recent advances in high-resolution mass spectrometry, soil metaproteomics still suffers from a lack of effective and reproducible protein extraction protocols and standardized data analyses. This review discusses the opportunities and limitations of selected techniques in soil-, and leaf litter metaproteomics, and presents a step-by-step guideline on their application, covering sampling, sample preparation, extraction and data evaluation strategies. In addition, we present recent applications of soil metaproteomics and discuss how such approaches, linking phylogenetics and functionality, can help gain deeper insights into terrestrial microbial ecology. Finally, we strongly recommend that to maximize the insights environmental metaproteomics may provide, such methods should be employed within a holistic experimental approach considering relevant aboveground and belowground ecosystem parameters.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.