Evidence map›Paper›PMID 27548383›Full record

ArticlePloS one2016

Genetic Analysis with the Immunochip Platform in Behçet Disease. Identification of Residues Associated in the HLA Class I Region and New Susceptibility Loci.

Lourdes Ortiz-Fernández, Francisco-David Carmona, Marco-Antonio Montes-Cano, José-Raúl García-Lozano, Marta Conde-Jaldón, Norberto Ortego-Centeno, María Jesús Castillo, Gerard Espinosa, Genaro Graña-Gil, Juan Sánchez-Bursón and 13 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 5 pooled it
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 5 syntheses or guidelines pooled it, 66 citations in OpenAlex.

  1. Behçet's Disease: A Comprehensive Review on the Role ofInternational journal of molecular sciences · 2023
    Pooled it
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  4. Cross-phenotype analysis of Immunochip data identifiesAnnals of the rheumatic diseases · 2018
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  15. Genetics in Behcet's Disease: An Update Review.Frontiers in ophthalmology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 17 institutions in 1 country.

Lourdes Ortiz-FernándezDepartment of Immunology, Hospital Universitario Virgen del Rocío (IBiS, CSIC, US), Sevilla, 41013, Spain.
Francisco-David CarmonaInstituto de Parasitología y Biomedicina "López-Neyra", CSIC, PTS Granada, Granada, 18016, Spain.
Marco-Antonio Montes-CanoDepartment of Immunology, Hospital Universitario Virgen del Rocío (IBiS, CSIC, US), Sevilla, 41013, Spain.
José-Raúl García-LozanoDepartment of Immunology, Hospital Universitario Virgen del Rocío (IBiS, CSIC, US), Sevilla, 41013, Spain.
Marta Conde-JaldónDepartment of Immunology, Hospital Universitario Virgen del Rocío (IBiS, CSIC, US), Sevilla, 41013, Spain.
Norberto Ortego-CentenoDepartment of Internal Medicine, Hospital Clínico San Cecilio, Granada, 18003, Spain.
María Jesús CastilloDepartment of Internal Medicine, Hospital Universitario Virgen del Rocío, Sevilla, 41003, Spain.
Gerard EspinosaDepartment Autoimmune Diseases, Hospital Universitari Clínic, Barcelona, 08036, Spain.ORCID http://orcid.org/0000-0003-1336-0163
Genaro Graña-GilDepartment of Rheumatology, Complejo Hospitalario Universitario A Coruña, A Coruña, 15006, Spain.ORCID http://orcid.org/0000-0001-9041-8117
Juan Sánchez-BursónDepartment of Rheumatology, Hospital Universitario de Valme, Sevilla, 41014, Spain.
María Rosa JuliáDepartment of Immunology, Hospital Universitari Son Espases, Palma de Mallorca, 07120, Spain.
Roser SolansDepartment of Internal Medicine, Autoimmune Systemic Diseases Unit, Hospital Vall d'Hebron, Universidad Autonoma de Barcelona, Barcelona, 08035, Spain.
Ricardo BlancoDepartment of Rheumatology, Hospital Universitario Marqués de Valdecilla, Santander, 39008, Spain.
Ana-Celia Barnosi-MarínDepartment of Internal Medicine, Complejo Hospitalario Torrecárdenas, Almería, 04009, Spain.
Ricardo Gómez de la TorreDepartment of Internal Medicine, Hospital Universitario Central de Asturias, Asturias, 33011, Spain.
Patricia FanloDepartment of Internal Medicine, Hospital Virgen del Camino, Pamplona, 31008, Spain.
Mónica Rodríguez-CarballeiraDeparment of Internal Medicine, Hospital Universitari Mútua Terrassa, Terrassa, 08221, Spain.
Luis Rodríguez-RodríguezDepartment of Rheumatology, Hospital Clínico San Carlos, Madrid, 28040, Spain.ORCID http://orcid.org/0000-0002-2869-7861
Teresa CampsDepartment of Internal Medicine, Hospital Regional Universitario de Málaga, Málaga, 29010, Spain.
Santos CastañedaDepartment of Rheumatology, Hospital de la Princesa, IIS-Princesa, Madrid, 28006, Spain.
Juan-Jose Alegre-SanchoDepartment of Rheumatology, Hospital Universitario Doctor Peset, Valencia, 46017, Spain.
Javier MartínInstituto de Parasitología y Biomedicina "López-Neyra", CSIC, PTS Granada, Granada, 18016, Spain.
María Francisca González-EscribanoDepartment of Immunology, Hospital Universitario Virgen del Rocío (IBiS, CSIC, US), Sevilla, 41013, Spain.
Hospital Universitario Virgen del Rocío · ESInstituto de Parasitología y Biomedicina "López - Neyra" · ESComplejo Hospitalario Torrecárdenas · ESComplexo Hospitalario Universitario A Coruña · ESHospital Clínico San Carlos · ESHospital Regional Universitario de Málaga · ESHospital Universitari de Vic · ESHospital Universitario Central de Asturias · ESHospital Universitario de La Princesa · ESHospital Universitario de Valme · ESHospital Universitario Doctor Peset · ESHospital Universitario Son Espases · ESHospital Virgen del Camino · ESInstituto de Investigación Biosanitaria de Granada · ESMarqués de Valdecilla University Hospital · ESMútua Terrassa · ESUniversitat Autònoma de Barcelona · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Behcet's disease (BD) is an immuno-mediated vasculitis in which knowledge of its etiology and genetic basis is limited. To improve the current knowledge, a genetic analysis performed with the Immunochip platform was carried out in a population from Spain. A discovery cohort comprising 278 BD cases and 1,517 unaffected controls were genotyped using the Immunochip platform. The validation step was performed on an independent replication cohort composed of 130 BD cases and 600 additional controls. The strongest association signals were observed in the HLA class I region, being HLA-B*51 the highest peak (overall P = 6.82E-32, OR = 3.82). A step-wise conditional logistic regression with classical alleles identified HLA-B*57 and HLA-A*03 as additional independent markers. The amino acid model that best explained the association, includes the position 97 of the HLA-B molecule and the position 66 of the HLA-A. Among the non-HLA loci, the most significant in the discovery analysis were: IL23R (rs10889664: P = 3.81E-12, OR = 2.00), the JRKL/CNTN5 region (rs2848479: P = 5.00E-08, OR = 1.68) and IL12A (rs1874886: P = 6.67E-08, OR = 1.72), which were confirmed in the validation phase (JRKL/CNTN5 rs2848479: P = 3.29E-10, OR = 1.66; IL12A rs1874886: P = 1.62E-08, OR = 1.61). Our results confirm HLA-B*51 as a primary-association marker in predisposition to BD and suggest additional independent signals within the class I region, specifically in the genes HLA-A and HLA-B. Regarding the non-HLA genes, in addition to IL-23R, previously reported in our population; IL12A, described in other populations, was found to be a BD susceptibility factor also in Spaniards; finally, a new associated locus was found in the JRKL/CNTN5 region.

Indexed as

Genetic Predisposition to DiseaseAllelesBehcet SyndromeCase-Control StudiesContactinsGene FrequencyGenetic LociHLA-A3 AntigenHLA-B51 AntigenHLA-B AntigensHumansImmunoassayInterleukin-12 Subunit p35Logistic ModelsMicroarray AnalysisModels, MolecularCNTN5 protein, humanContactinsHLA-A3 AntigenHLA-B51 AntigenHLA-B57 antigenHLA-B AntigensIL12A protein, humanIL23R protein, humanInterleukin-12 Subunit p35Receptors, Interleukin

Identifiers

PMID27548383
PMCPMC4993481
OpenAlexW2513185171

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.