Evidence map›Paper›PMID 27548314›Full record

ArticleNature genetics2016

Recurrent somatic mutations in POLR2A define a distinct subset of meningiomas.

Victoria E Clark, Akdes Serin Harmancı, Hanwen Bai, Mark W Youngblood, Tong Ihn Lee, Jacob F Baranoski, A Gulhan Ercan-Sencicek, Brian J Abraham, Abraham S Weintraub, Denes Hnisz and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 218 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
218citing papers in PubMed, 1 pooled it
15.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

218 citing papers in PubMed, 1 synthesis or guideline pooled it, 349 citations in OpenAlex.

  1. Guideline
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  3. Alliance A071401: Phase II Trial of Focal Adhesion Kinase Inhibition in Meningiomas With SomaticJournal of clinical oncology : official journal of the American Society of Clinical Oncology · 2023
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158 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 5 institutions in 2 countries.

Victoria E ClarkYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Akdes Serin HarmancıYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Hanwen BaiYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.ORCID 0000-0002-8473-5279
Mark W YoungbloodYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Tong Ihn LeeWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Jacob F BaranoskiYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
A Gulhan Ercan-SencicekDepartment of Neurosurgery, Yale School of Medicine, New Haven, Connecticut, USA.
Brian J AbrahamWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Abraham S WeintraubWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Denes HniszWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Matthias SimonDepartment of Neurosurgery, University of Bonn Medical School, Bonn, Germany.
Boris KrischekDepartment of General Neurosurgery, University Hospital of Cologne, Cologne, Germany.
E Zeynep Erson-OmayYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Octavian HenegariuYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Geneive Carrión-GrantYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Ketu Mishra-GorurYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Daniel DuránYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Johanna E GoldmannWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.
Johannes SchrammMedical Faculty, University of Bonn Medical School, Bonn, Germany.
Roland GoldbrunnerDepartment of General Neurosurgery, University Hospital of Cologne, Cologne, Germany.
Joseph M PiepmeierDepartment of Neurosurgery, Yale School of Medicine, New Haven, Connecticut, USA.
Alexander O VortmeyerDepartment of Pathology, Yale School of Medicine, New Haven, Connecticut, USA.
Jennifer Moliterno GünelYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Kaya BilgüvarYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Katsuhito YasunoYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.ORCID 0000-0002-3606-532X
Richard A YoungWhitehead Institute for Biomedical Research, Cambridge, Massachusetts, USA.ORCID 0000-0001-8855-8647
Murat GünelYale Program in Brain Tumor Research, Yale School of Medicine, New Haven, Connecticut, USA.
Yale Cancer Center · USWhitehead Institute for Biomedical Research · USYale University · USUniversity Hospital Cologne · DEUniversity of Bonn · DE

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
PRE-DOCTORAL TRAINING IN THE BIOLOGICAL SCIENCEST32GM007287 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BELL, STEPHEN P., KEATING, AMY E · 1985 to 2019
$40.8M
Institutional Career Development CoreKL2TR001862 · NCATS · YALE UNIVERSITY · PI CANTLEY, LLOYD G, EDELMAN, E. JENNIFER · 2016 to 2025
$12.2M
NRSA Training CoreTL1TR001864 · NCATS · YALE UNIVERSITY · PI CANTLEY, LLOYD G, EDELMAN, E. JENNIFER · 2016 to 2025
$9.9M
Characterizing the genomic architecture and molecular mechanisms driving the formF30CA183530 · NCI · YALE UNIVERSITY · PI CLARK, VICTORIA · 2014 to 2016
$121k
NCATS NIH HHS KL2 TR001862NCATS NIH HHS TL1 TR001864NCATS NIH HHS UL1 TR001863NCI NIH HHS F30 CA183530NCI NIH HHS P30 CA016359NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32 GM007287
6 · The paper itself

Abstract

RNA polymerase II mediates the transcription of all protein-coding genes in eukaryotic cells, a process that is fundamental to life. Genomic mutations altering this enzyme have not previously been linked to any pathology in humans, which is a testament to its indispensable role in cell biology. On the basis of a combination of next-generation genomic analyses of 775 meningiomas, we report that recurrent somatic p.Gln403Lys or p.Leu438_His439del mutations in POLR2A, which encodes the catalytic subunit of RNA polymerase II (ref. 1), hijack this essential enzyme and drive neoplasia. POLR2A mutant tumors show dysregulation of key meningeal identity genes, including WNT6 and ZIC1/ZIC4. In addition to mutations in POLR2A, NF2, SMARCB1, TRAF7, KLF4, AKT1, PIK3CA, and SMO, we also report somatic mutations in AKT3, PIK3R1, PRKAR1A, and SUFU in meningiomas. Our results identify a role for essential transcriptional machinery in driving tumorigenesis and define mutually exclusive meningioma subgroups with distinct clinical and pathological features.

Indexed as

MutationCatalytic DomainChromosomes, Human, Pair 22Cohort StudiesDNA Mutational AnalysisEnhancer Elements, GeneticExomeGene Expression Regulation, NeoplasticGenotypeHumansKruppel-Like Factor 4Kruppel-Like Transcription FactorsMeningeal NeoplasmsMeningiomaNeurofibromin 2RNA Polymerase IIKLF4 protein, humanKruppel-Like Factor 4Kruppel-Like Transcription FactorsNeurofibromin 2RNA Polymerase IITRAF7 protein, humanTumor Necrosis Factor Receptor-Associated Peptides and Proteins

Identifiers

PMID27548314
PMCPMC5114141
OpenAlexW2510419110

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.