Evidence map›Paper›PMID 27548162›Full record

ArticleInternational journal of molecular sciences2016

Antimicrobial Protein Candidates from the Thermophilic Geobacillus sp. Strain ZGt-1: Production, Proteomics, and Bioinformatics Analysis.

Rawana N Alkhalili, Katja Bernfur, Tarek Dishisha, Gashaw Mamo, Jenny Schelin, Björn Canbäck, Cecilia Emanuelsson, Rajni Hatti-Kaul

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  4. Isolation of Thermophilic BacteriaInternational journal of dentistry · 2024
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  7. Antimicrobial Potential of the GeneraAntibiotics (Basel, Switzerland) · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Collection of antimicrobial peptides database and its derivatives: Applications and beyond.Protein science : a publication of the Protein Society · 2020
    Article
  13. Towards Exploring Toxin-Antitoxin Systems inInternational journal of molecular sciences · 2019
    Article
  14. Article
  15. Article
  16. Frontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Rawana N AlkhaliliBiotechnology, Department of Chemistry, Lund University, Lund SE-221 00, Sweden. rawana.alkhalili@biotek.lu.se.
Katja BernfurCenter for Molecular Protein Science, Department of Chemistry, Lund University, Lund SE-221 00, Sweden. katja.bernfur@biochemistry.lu.se.
Tarek DishishaBiotechnology, Department of Chemistry, Lund University, Lund SE-221 00, Sweden. tarek.dishisha@pharm.bsu.edu.eg.
Gashaw MamoBiotechnology, Department of Chemistry, Lund University, Lund SE-221 00, Sweden. gashaw.mamo@biotek.lu.se.
Jenny SchelinApplied Microbiology, Department of Chemistry, Lund University, Lund SE-221 00, Sweden. jenny.schelin@tmb.lth.se.
Björn CanbäckDepartment of Biology, Microbial Ecology Group, Lund University, Lund SE-221 00, Sweden. bjorn.canback@biol.lu.se.
Cecilia EmanuelssonCenter for Molecular Protein Science, Department of Chemistry, Lund University, Lund SE-221 00, Sweden. cecilia.emanuelsson@biochemistry.lu.se.
Rajni Hatti-KaulBiotechnology, Department of Chemistry, Lund University, Lund SE-221 00, Sweden. rajni.hatti-kaul@biotek.lu.se.
Lund University · SEBeni-Suef University · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A thermophilic bacterial strain, Geobacillus sp. ZGt-1, isolated from Zara hot spring in Jordan, was capable of inhibiting the growth of the thermophilic G. stearothermophilus and the mesophilic Bacillus subtilis and Salmonella typhimurium on a solid cultivation medium. Antibacterial activity was not observed when ZGt-1 was cultivated in a liquid medium; however, immobilization of the cells in agar beads that were subjected to sequential batch cultivation in the liquid medium at 60 °C showed increasing antibacterial activity up to 14 cycles. The antibacterial activity was lost on protease treatment of the culture supernatant. Concentration of the protein fraction by ammonium sulphate precipitation followed by denaturing polyacrylamide gel electrophoresis separation and analysis of the gel for antibacterial activity against G. stearothermophilus showed a distinct inhibition zone in 15-20 kDa range, suggesting that the active molecule(s) are resistant to denaturation by SDS. Mass spectrometric analysis of the protein bands around the active region resulted in identification of 22 proteins with molecular weight in the range of interest, three of which were new and are here proposed as potential antimicrobial protein candidates by in silico analysis of their amino acid sequences. Mass spectrometric analysis also indicated the presence of partial sequences of antimicrobial enzymes, amidase, and dd-carboxypeptidase.

Indexed as

Anti-Infective AgentsBacterial ProteinsComputational BiologyGeobacillusHot TemperatureProteomicsAnti-Infective AgentsBacterial Proteinsantimicrobial proteinscell-recyclingfood spoilage bacteriaGeobacillusimmobilizationSDS-resistant proteinsthermophile

Identifiers

PMID27548162
PMCPMC5000758
OpenAlexW2508267933

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.