Evidence map›Paper›PMID 27547442›Full record

ArticleBMJ open gastroenterology2016

Gut microbiota associated with HIV infection is significantly enriched in bacteria tolerant to oxygen.

Grégory Dubourg, Jean-Christophe Lagier, Sophie Hüe, Mathieu Surenaud, Dipankar Bachar, Catherine Robert, Caroline Michelle, Isabelle Ravaux, Saadia Mokhtari, Matthieu Million and 4 more

Expression of concernOpen access · goldAbstract read
In one paragraph

Article in BMJ open gastroenterology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It carries an expression of concern. Cited by 48 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 2 pooled it
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 2 syntheses or guidelines pooled it, 95 citations in OpenAlex.

  1. The Impact of Human Immunodeficiency Virus Infection on Gut Microbiota α-Diversity: An Individual-level Meta-analysis.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2020
    Pooled it
  2. Gut Microbiome Changes Associated With HIV Infection and Sexual Orientation.Frontiers in cellular and infection microbiology · 2020
    Pooled it
  3. Microbe on the move:Journal of bacteriology · 2026
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

Grégory DubourgFaculté de Médecine, URMITE, UMR CNRS 6236-IRD 198, Aix-Marseille Université, Marseille, France; Pôle des Maladies Infectieuses et Tropicales Clinique et Biologique, Fédération de Bactériologie-Hygiène-Virologie, University Hospital Centre Timone, Institut Hospitalo-Universitaire (IHU) Méditerranée Infection, Assistance Publique-Hôpitaux de Marseille, Marseille, France.
Jean-Christophe LagierFaculté de Médecine, URMITE , UMR CNRS 6236-IRD 198, Aix-Marseille Université , Marseille , France.
Sophie HüeINSERM, U955, Equipe 16, Créteil, 94000, France; Université Paris Est, Faculté de médecine, Créteil, France; Vaccine Research Institute (VRI), Créteil, France; AP-HP, Hôpital H. Mondor-A. Chenevier, Service d'immunologie biologique, Créteil, France.
Mathieu SurenaudINSERM, U955, Equipe 16, Créteil, 94000, France; Université Paris Est, Faculté de médecine, Créteil, France; Vaccine Research Institute (VRI), Créteil, France.
Dipankar BacharFaculté de Médecine, URMITE , UMR CNRS 6236-IRD 198, Aix-Marseille Université , Marseille , France.
Catherine RobertFaculté de Médecine, URMITE , UMR CNRS 6236-IRD 198, Aix-Marseille Université , Marseille , France.
Caroline MichelleFaculté de Médecine, URMITE , UMR CNRS 6236-IRD 198, Aix-Marseille Université , Marseille , France.
Isabelle RavauxService de Maladies Infectieuses et tropicales, CHU de la Conception , 147, boulevard Baille, Pôle Infectieux, Institut Hospitalo-Universitaire Méditerranée Infection , Marseille , France.
Saadia MokhtariAssistance Publique Hôpitaux de Marseille, CHU Nord, Pôle Infectieux, Institut Hospitalo-Universitaire Méditerranée Infection , Marseille , France.
Matthieu MillionFaculté de Médecine, URMITE, UMR CNRS 6236-IRD 198, Aix-Marseille Université, Marseille, France; Assistance Publique Hôpitaux de Marseille, CHU Nord, Pôle Infectieux, Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France.
Andreas SteinService de Maladies Infectieuses et tropicales, CHU de la Conception , 147, boulevard Baille, Pôle Infectieux, Institut Hospitalo-Universitaire Méditerranée Infection , Marseille , France.
Philippe BrouquiFaculté de Médecine, URMITE, UMR CNRS 6236-IRD 198, Aix-Marseille Université, Marseille, France; Assistance Publique Hôpitaux de Marseille, CHU Nord, Pôle Infectieux, Institut Hospitalo-Universitaire Méditerranée Infection, Marseille, France.
Yves LevyINSERM, U955, Equipe 16, Créteil, 94000, France; Université Paris Est, Faculté de médecine, Créteil, France; Vaccine Research Institute (VRI), Créteil, France; AP-HP, Hôpital H. Mondor-A. Chenevier, Service d'immunologie biologique, Créteil, France; AP-HP, Hôpital H. Mondor-A. Chenevier, Service d'immunologie clinique et maladies infectieuses, Créteil, France.
Didier RaoultFaculté de Médecine, URMITE, UMR CNRS 6236-IRD 198, Aix-Marseille Université, Marseille, France; Pôle des Maladies Infectieuses et Tropicales Clinique et Biologique, Fédération de Bactériologie-Hygiène-Virologie, University Hospital Centre Timone, Institut Hospitalo-Universitaire (IHU) Méditerranée Infection, Assistance Publique-Hôpitaux de Marseille, Marseille, France; Special Infectious Agents Unit, King Fahd Medical Research Center, King Abdulaziz University, Jeddah, Saudi Arabia.
Centre National de la Recherche Scientifique · FRInserm · FRMéditerranée Infection Foundation · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesGut microbiota modifications occurring during HIV infection have recently been associated with inflammation and microbial translocation. However, discrepancies between studies justified a comprehensive analysis performed on a large sample size. DESIGN AND

methodsIn a case-control study, next-generation sequencing of the 16S rRNA gene was applied to the faecal microbiota of 31 HIV-infected patients, of whom 18 were treated with antiretroviral treatment (ART), compared with 27 healthy controls. 21 sera samples from HIV-infected patients and 7 sera samples from control participants were used to test the presence of 25 markers of inflammation and/or immune activation.

resultsDiversity was significantly reduced in HIV individuals when compared with controls and was not restored in the ART group. The relative abundance of several members of Ruminococcaceae such as Faecalibacterium prausnitzii was critically less abundant in the HIV-infected group and inversely correlated with inflammation/immune activation markers. Members of Enterobacteriaceae and Enterococcaceae were found to be enriched and positively correlated with these markers. There were significantly more aerotolerant species enriched in HIV samples (42/52 species, 80.8%) when compared with the control group (14/87 species, 16.1%; χ(2) test, p<10(-5), conditional maximum-likelihood estimate (CMLE) OR=21.9).

conclusionsImbalance between aerobic and anaerobic flora observed in HIV faecal microbiota could be a consequence of the gut impairment classically observed in HIV infection via the production of oxygen. Overgrowth of proinflammatory aerobic species during HIV infection raises the question of antioxidant supplementation, such as vitamin C, E or N-acetylcysteine.

Indexed as

HIV/AIDSINFLAMMATIONINTESTINAL BACTERIAOXIDATIVE STRESS

Identifiers

PMID27547442
PMCPMC4985784
OpenAlexW2506060000

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.