Evidence map›Paper›PMID 27546548›Full record

ArticleScientific reports2016

Pichia pastoris Fep1 is a [2Fe-2S] protein with a Zn finger that displays an unusual oxygen-dependent role in cluster binding.

Antimo Cutone, Barry D Howes, Adriana E Miele, Rossella Miele, Alessandra Giorgi, Andrea Battistoni, Giulietta Smulevich, Giovanni Musci, Maria Carmela Bonaccorsi di Patti

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.3field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Antimo CutoneDip. Scienze Biochimiche 'A. Rossi Fanelli', Sapienza Università di Roma, Roma, Italy.
Barry D HowesDip. Chimica 'Ugo Schiff', Università di Firenze, Sesto Fiorentino (FI), Italy.
Adriana E MieleDip. Scienze Biochimiche 'A. Rossi Fanelli', Sapienza Università di Roma, Roma, Italy.
Rossella MieleDip. Scienze Biochimiche 'A. Rossi Fanelli', Sapienza Università di Roma, Roma, Italy.
Alessandra GiorgiDip. Scienze Biochimiche 'A. Rossi Fanelli', Sapienza Università di Roma, Roma, Italy.
Andrea BattistoniDip. Biologia, Università di Roma Tor Vergata, Roma, Italy.
Giulietta SmulevichDip. Chimica 'Ugo Schiff', Università di Firenze, Sesto Fiorentino (FI), Italy.
Giovanni MusciDip. Bioscienze e Territorio, Università del Molise, Pesche, Italy.
Maria Carmela Bonaccorsi di PattiDip. Scienze Biochimiche 'A. Rossi Fanelli', Sapienza Università di Roma, Roma, Italy.
Sapienza University of Rome · ITInstitut de Chimie et Biochimie Moléculaires et Supramoléculaires · FRUniversity of Florence · ITUniversity of Molise · ITUniversity of Rome Tor Vergata · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fep1, the iron-responsive GATA factor from the methylotrophic yeast Pichia pastoris, has been characterised both in vivo and in vitro. This protein has two Cys2-Cys2 type zinc fingers and a set of four conserved cysteines arranged in a Cys-X5-Cys-X8-Cys-X2-Cys motif located between the two zinc fingers. Electronic absorption and resonance Raman spectroscopic analyses in anaerobic and aerobic conditions indicate that Fep1 binds iron in the form of a [2Fe-2S] cluster. Site-directed mutagenesis shows that replacement of the four cysteines with serine inactivates this transcriptional repressor. Unexpectedly, the inactive mutant is still able to bind a [2Fe-2S] cluster, employing two cysteine residues belonging to the first zinc finger. These two cysteine residues can act as alternative cluster ligands selectively in aerobically purified Fep1 wild type, suggesting that oxygen could play a role in Fep1 function by causing differential localization of the [Fe-S] cluster.

Identifiers

PMID27546548
PMCPMC4992955
OpenAlexW2512503011

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.