Evidence map›Paper›PMID 27545823›Full record

ArticleNature communications2016

Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography.

Przemyslaw Nogly, Valerie Panneels, Garrett Nelson, Cornelius Gati, Tetsunari Kimura, Christopher Milne, Despina Milathianaki, Minoru Kubo, Wenting Wu, Chelsie Conrad and 30 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
24.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 85 citations in OpenAlex.

  1. Article
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  6. The time revolution in macromolecular crystallography.Structural dynamics (Melville, N.Y.) · 2024
    Article
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  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  17. High-throughput in situ experimental phasing.Acta crystallographica. Section D, Structural biology · 2020
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors at 9 institutions in 5 countries.

Przemyslaw NoglyLaboratory for Biomolecular Research, Paul Scherrer Institute, Villigen 5232, Switzerland.ORCID 0000-0002-8040-7753
Valerie PanneelsLaboratory for Biomolecular Research, Paul Scherrer Institute, Villigen 5232, Switzerland.
Garrett NelsonDepartment of Physics, Arizona State University, Tempe, Arizona 85287, USA.
Cornelius GatiCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany.
Tetsunari KimuraBiometal Science Laboratory, RIKEN SPring-8 Center, Hyogo 679-5148, Japan.
Christopher MilneSwissFEL, Paul Scherrer Institute, Villigen 5232, Switzerland.ORCID 0000-0003-4714-9139
Despina MilathianakiLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA.
Minoru KuboBiometal Science Laboratory, RIKEN SPring-8 Center, Hyogo 679-5148, Japan.
Wenting WuLaboratory for Biomolecular Research, Paul Scherrer Institute, Villigen 5232, Switzerland.
Chelsie ConradDepartment of Chemistry and Biochemistry, and Center for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona 85287-1604, USA.
Jesse CoeDepartment of Chemistry and Biochemistry, and Center for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona 85287-1604, USA.
Richard BeanCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany.
Yun ZhaoDepartment of Physics, Arizona State University, Tempe, Arizona 85287, USA.
Petra BåthDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, SE-40530 Gothenburg, Sweden.
Robert DodsDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, SE-40530 Gothenburg, Sweden.
Rajiv HarimoorthyDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, SE-40530 Gothenburg, Sweden.
Kenneth R BeyerleinCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany.
Jan RheinbergerLaboratory for Biomolecular Research, Paul Scherrer Institute, Villigen 5232, Switzerland.
Daniel JamesLaboratory for Biomolecular Research, Paul Scherrer Institute, Villigen 5232, Switzerland.ORCID 0000-0002-8348-6661
Daniel DePonteLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA.
Chufeng LiDepartment of Physics, Arizona State University, Tempe, Arizona 85287, USA.
Leonardo SalaSwissFEL, Paul Scherrer Institute, Villigen 5232, Switzerland.
Garth J WilliamsLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA.
Mark S HunterLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA.
Jason E KoglinLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA.ORCID 0000-0001-6811-6083
Peter BerntsenDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, SE-40530 Gothenburg, Sweden.
Eriko NangoSACLA Science Research Group, RIKEN/SPring-8 Center, Hyogo 679-5148, Japan.
So IwataSACLA Science Research Group, RIKEN/SPring-8 Center, Hyogo 679-5148, Japan.
Henry N ChapmanCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany.ORCID 0000-0002-4655-1743
Petra FrommeDepartment of Chemistry and Biochemistry, and Center for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, Arizona 85287-1604, USA.
Matthias FrankLawrence Livermore National Laboratory, Livermore 94550, USA.ORCID 0000-0002-5244-0791
Rafael AbelaSwissFEL, Paul Scherrer Institute, Villigen 5232, Switzerland.
Sébastien BoutetLinac Coherent Light Source (LCLS), SLAC National Accelerator Laboratory, Menlo Park, California 94025, USA.
Anton BartyCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany.
Thomas A WhiteCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron DESY, 22607 Hamburg, Germany.
Uwe WeierstallDepartment of Physics, Arizona State University, Tempe, Arizona 85287, USA.
John SpenceDepartment of Physics, Arizona State University, Tempe, Arizona 85287, USA.
Richard NeutzeDepartment of Chemistry and Molecular Biology, University of Gothenburg, Box 462, SE-40530 Gothenburg, Sweden.
Gebhard SchertlerLaboratory for Biomolecular Research, Paul Scherrer Institute, Villigen 5232, Switzerland.
Jörg StandfussLaboratory for Biomolecular Research, Paul Scherrer Institute, Villigen 5232, Switzerland.
Paul Scherrer Institute · CHArizona State University · USSLAC National Accelerator Laboratory · USUniversität Hamburg · DEUniversity of Gothenburg · SESPring-8 · JPJapan Science and Technology Agency · JPKyoto University · JPLawrence Livermore National Laboratory · US

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Femtosecond nano-crystallography of membrane proteinsR01GM095583 · NIGMS · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI FROMME, PETRA · 2010 to 2023
$4.3M
NCRR NIH HHS P41 RR001209NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

Serial femtosecond crystallography (SFX) using X-ray free-electron laser sources is an emerging method with considerable potential for time-resolved pump-probe experiments. Here we present a lipidic cubic phase SFX structure of the light-driven proton pump bacteriorhodopsin (bR) to 2.3 Å resolution and a method to investigate protein dynamics with modest sample requirement. Time-resolved SFX (TR-SFX) with a pump-probe delay of 1 ms yields difference Fourier maps compatible with the dark to M state transition of bR. Importantly, the method is very sample efficient and reduces sample consumption to about 1 mg per collected time point. Accumulation of M intermediate within the crystal lattice is confirmed by time-resolved visible absorption spectroscopy. This study provides an important step towards characterizing the complete photocycle dynamics of retinal proteins and demonstrates the feasibility of a sample efficient viscous medium jet for TR-SFX.

Indexed as

LasersBacteriorhodopsinsCrystallography, X-RayFeasibility StudiesLipidsProtein ConformationSynchrotronsTime FactorsViscosityX-Ray Absorption SpectroscopyBacteriorhodopsinsLipids

Identifiers

PMID27545823
PMCPMC4996941
OpenAlexW2516493969

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.