Evidence map›Paper›PMID 27545569›Full record

ArticleJournal of the American Chemical Society2016

A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase.

Yufan Wu, Steven G Boxer

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 132 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Peeling tape produces strong electric fields via stick-slip friction that drive chemical reactions.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Spatially Regulated Electrical Forces for Biological Catalysis.Reviews of physiology, biochemistry and pharmacology · 2025
    Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Protein Dynamics and Enzymatic Catalysis.The journal of physical chemistry. B · 2023
    Review
  17. Engineering enzyme activity using an expanded amino acid alphabet.Protein engineering, design & selection : PEDS · 2023
    Article
  18. Article
  19. Article
  20. Setting Boundaries for Statistical Mechanics.Molecules (Basel, Switzerland) · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Yufan WuDepartment of Chemistry, Stanford University , Stanford, California 94305-5012, United States.
Steven G BoxerDepartment of Chemistry, Stanford University , Stanford, California 94305-5012, United States.
Stanford University · US

Funding

Biophysical Studies of Macromolecules and Molecular AssembliesR35GM118044 · NIGMS · STANFORD UNIVERSITY · PI STEVEN G. BOXER · 2016 to 2026
$7.2M
NMR &CIDNP STUDIES OF MB MUTANTS &OLIGONUCLEOTIDE LOOPR01GM027738 · NIGMS · STANFORD UNIVERSITY · PI BOXER, STEVEN G. · 1985 to 2016
$4.3M
ELECTROSTATICS AND DYNAMICS IN MYOGLOBIN MUTANTSR37GM027738 · NIGMS · STANFORD UNIVERSITY · PI BOXER, STEVEN G. · 1994 to 2003
$1.2M
NIGMS NIH HHS R01 GM027738NIGMS NIH HHS R35 GM118044NIGMS NIH HHS R37 GM027738
6 · The paper itself

Abstract

The vibrational Stark effect (VSE) has been used to measure the electric field in the active site of ketosteroid isomerase (KSI). These measured fields correlate with ΔG(⧧) in a series of conventional mutants, yielding an estimate for the electrostatic contribution to catalysis (Fried et al. Science 2014, 346, 1510-1513). In this work we test this result with much more conservative variants in which individual Tyr residues in the active site are replaced by 3-chlorotyrosine via amber suppression. The electric fields sensed at the position of the carbonyl bond involved in charge displacement during catalysis were characterized using the VSE, where the field sensitivity has been calibrated by vibrational Stark spectroscopy, solvatochromism, and MD simulations. A linear relationship is observed between the electric field and ΔG(⧧) that interpolates between wild-type and more drastic conventional mutations, reinforcing the evaluation of the electrostatic contribution to catalysis in KSI. A simplified model and calculation are developed to estimate changes in the electric field accompanying changes in the extended hydrogen-bond network in the active site. The results are consistent with a model in which the O-H group of a key active site tyrosine functions by imposing a static electrostatic potential onto the carbonyl bond. The model suggests that the contribution to catalysis from the active site hydrogen bonds is of similar weight to the distal interactions from the rest of the protein. A similar linear correlation was also observed between the proton affinity of KSI's active site and the catalytic rate, suggesting a direct connection between the strength of the H-bond and the electric field it exerts.

Indexed as

BiocatalysisStatic ElectricityCatalytic DomainHydrogen BondingKetosteroidsMolecular Dynamics SimulationMutationSteroid IsomerasesKetosteroidsSteroid Isomerases

Identifiers

PMID27545569
PMCPMC5063566
OpenAlexW2509067241

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.