Evidence map›Paper›PMID 27543613›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2016

Characterization of Lamprey BAFF-like Gene: Evolutionary Implications.

Sabyasachi Das, Yoichi Sutoh, Masayuki Hirano, Qifeng Han, Jianxu Li, Max D Cooper, Brantley R Herrin

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. AncientJournal of immunology (Baltimore, Md. : 1950) · 2019
    Article
  7. Article
  8. Article
  9. Regulation of IgMFrontiers in immunology · 2018
    Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Sabyasachi DasDepartment of Pathology and Laboratory Medicine, Emory Vaccine Center, Emory University, Atlanta, GA 30322 sdas8@emory.edu brherri@emory.edu.
Yoichi SutohDepartment of Pathology and Laboratory Medicine, Emory Vaccine Center, Emory University, Atlanta, GA 30322.ORCID 0000-0002-3470-0465
Masayuki HiranoDepartment of Pathology and Laboratory Medicine, Emory Vaccine Center, Emory University, Atlanta, GA 30322.ORCID 0000-0002-2455-9189
Qifeng HanDepartment of Pathology and Laboratory Medicine, Emory Vaccine Center, Emory University, Atlanta, GA 30322.
Jianxu LiDepartment of Pathology and Laboratory Medicine, Emory Vaccine Center, Emory University, Atlanta, GA 30322.
Max D CooperDepartment of Pathology and Laboratory Medicine, Emory Vaccine Center, Emory University, Atlanta, GA 30322.
Brantley R HerrinDepartment of Pathology and Laboratory Medicine, Emory Vaccine Center, Emory University, Atlanta, GA 30322 sdas8@emory.edu brherri@emory.edu.ORCID 0000-0002-1842-6806
Emory University · US

Funding

IMMUNOLOGIC DISEASES AND BASIC IMMUNOLOGYT32AI007051 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Laurie Ellen Harrington · 1985 to 2026
$13.1M
Characterization of the Lamprey Adaptive Immune SystemR01AI072435 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Max Dale Cooper · 2007 to 2026
$8.1M
Definition of an Ancient T cell-like System in LampreysR01GM100151 · NIGMS · EMORY UNIVERSITY · PI COOPER, MAX DALE · 2012 to 2016
$1.5M
Characterization of an Alternative Adaptive Immune System in HagfishR01GM108838 · NIGMS · EMORY UNIVERSITY · PI COOPER, MAX DALE · 2014 to 2016
$889k
NIAID NIH HHS R01 AI072435NIAID NIH HHS T32 AI007051NIGMS NIH HHS R01 GM100151NIGMS NIH HHS R01 GM108838
6 · The paper itself

Abstract

BAFF (TNF superfamily [TNFSF] 13B/Blys) and APRIL (TNFSF13) are important regulatory factors for lymphocyte activation and survival in mammals. A BAFF/APRIL-like relative called BAFF- and APRIL-like molecule (BALM) has also been identified in cartilaginous and bony fishes, and we report in this study a BAFF-like gene in lampreys. Our phylogenetic analysis of these genes and a related TNFSF12 gene called TNF-like weak inducer of apoptosis (TWEAK) suggest that, whereas an ancestral homolog of BAFF and APRIL was already present in a common ancestor of jawed and jawless vertebrates, TWEAK evolved early on in the jawed vertebrate lineage. Like mammalian BAFF and APRIL, the lamprey BAFF-like gene is expressed in T-like, B-like, and innate immune cells. The predicted protein encoded by this BAFF-like gene in lampreys exhibits higher sequence similarity with mammalian BAFF than APRIL. Correspondingly, we find BAFF orthologs in all of the jawed vertebrate representatives that we examined, although APRIL and/or BALM orthologs are not identifiable in certain jawed vertebrates. For example, BALM is not identifiable in tetrapods, and APRIL is not identifiable in several bony fishes or in birds, the latter of which also lack a TWEAK-like gene. Our analysis further suggests that a hybrid molecule called TWE-PRIL, which is a product of an in-genomic fusion between APRIL and TWEAK genes evolved early in mammalian evolution.

Indexed as

Evolution, MolecularAnimalsB-Cell Activation Factor ReceptorB-LymphocytesHumansLampreysMiceMutant Chimeric ProteinsOncorhynchus mykissPhylogenyReceptors, Tumor Necrosis FactorT-LymphocytesTumor Necrosis Factor Ligand Superfamily Member 13TWEAK ReceptorB-Cell Activation Factor ReceptorMutant Chimeric ProteinsReceptors, Tumor Necrosis FactorTumor Necrosis Factor Ligand Superfamily Member 13TWEAK Receptor

Identifiers

PMID27543613
PMCPMC5026938
OpenAlexW2516267817

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.