Evidence map›Paper›PMID 27543606›Full record

ArticleJournal of experimental botany2016

Genome-wide identification and characterization of TCP genes involved in ovule development of Phalaenopsis equestris.

Yu-Fu Lin, You-Yi Chen, Yu-Yun Hsiao, Ching-Yu Shen, Jui-Ling Hsu, Chuan-Ming Yeh, Nobutaka Mitsuda, Masaru Ohme-Takagi, Zhong-Jian Liu, Wen-Chieh Tsai

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 82 citations in OpenAlex.

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  16. Genome-Wide Identification of TCP Gene Family inInternational journal of molecular sciences · 2023
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  17. Advances in Research on the Regulation of Floral Development byCurrent issues in molecular biology · 2023
    Review
  18. Article
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  20. Genome-Wide Identification and Characterization ofMolecules (Basel, Switzerland) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Yu-Fu LinInstitute of Tropical Plant Sciences, National Cheng Kung University, Tainan, Taiwan.
You-Yi ChenInstitute of Tropical Plant Sciences, National Cheng Kung University, Tainan, Taiwan Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan.
Yu-Yun HsiaoDepartment of Life Sciences, National Cheng Kung University, Tainan, Taiwan Orchid Research and Development Center, National Cheng Kung University, Tainan, Taiwan.
Ching-Yu ShenInstitute of Tropical Plant Sciences, National Cheng Kung University, Tainan, Taiwan.
Jui-Ling HsuOrchid Research and Development Center, National Cheng Kung University, Tainan, Taiwan Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen, Shenzhen, China.
Chuan-Ming YehDivision of Strategic Research and Development, Graduate School of Science and Engineering, Satitama University, Saitama, Japan.
Nobutaka MitsudaResearch Institute of Bioproduction, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan.
Masaru Ohme-TakagiDivision of Strategic Research and Development, Graduate School of Science and Engineering, Satitama University, Saitama, Japan Research Institute of Bioproduction, National Institute of Advanced Industrial Science and Technology, Tsukuba, Japan.
Zhong-Jian LiuShenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Center of China and The Orchid Conservation and Research Center of Shenzhen, Shenzhen, China The Center for Biotechnology and BioMedicine, Graduate School at Shenzhen, Tsinghua University, Shenzhen, China College of Forestry, South China Agricultural University, Guangzhou, China.
Wen-Chieh TsaiInstitute of Tropical Plant Sciences, National Cheng Kung University, Tainan, Taiwan Department of Life Sciences, National Cheng Kung University, Tainan, Taiwan Orchid Research and Development Center, National Cheng Kung University, Tainan, Taiwan tsaiwc@mail.ncku.edu.tw.
National Cheng Kung University · TWNational Institute of Advanced Industrial Science and Technology · JPSouth China Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TEOSINTE-BRANCHED/CYCLOIDEA/PCF (TCP) proteins are plant-specific transcription factors known to have a role in multiple aspects of plant growth and development at the cellular, organ and tissue levels. However, there has been no related study of TCPs in orchids. Here we identified 23 TCP genes from the genome sequence of Phalaenopsis equestris Phylogenetic analysis distinguished two homology classes of PeTCP transcription factor families: classes I and II. Class II was further divided into two subclasses, CIN and CYC/TB1. Spatial and temporal expression analysis showed that PePCF10 was predominantly expressed in ovules at early developmental stages and PeCIN8 had high expression at late developmental stages in ovules, with overlapping expression at day 16 after pollination. Subcellular localization and protein-protein interaction analyses revealed that PePCF10 and PeCIN8 could form homodimers and localize in the nucleus. However, PePCF10 and PeCIN8 could not form heterodimers. In transgenic Arabidopsis thaliana plants (overexpression and SRDX, a super repression motif derived from the EAR-motif of the repression domain of tobacco ETHYLENE-RESPONSIVE ELEMENT-BINDING FACTOR 3 and SUPERMAN, dominantly repressed), the two genes helped regulate cell proliferation. Together, these results suggest that PePCF10 and PeCIN8 play important roles in orchid ovule development by modulating cell division.

Indexed as

ArabidopsisCell DivisionGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantGenes, PlantGenome-Wide Association StudyIn Situ HybridizationOrchidaceaeOvulePhylogenyPlants, Genetically ModifiedReal-Time Polymerase Chain ReactionSequence AlignmentSequence Analysis, DNATranscription FactorsTwo-Hybrid System TechniquesTranscription FactorsCell proliferationfunctional characterizationgenome-wide identificationovule developmentPhalaenopsis equestrisTEOSINTE-BRANCHED/CYCLOIDEA/PCF (TCP) proteins.

Identifiers

PMID27543606
PMCPMC5014156
OpenAlexW2509075769

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.