Evidence map›Paper›PMID 27543604›Full record

ArticleJournal of experimental botany2016

The photomorphogenic factors UV-B RECEPTOR 1, ELONGATED HYPOCOTYL 5, and HY5 HOMOLOGUE are part of the UV-B signalling pathway in grapevine and mediate flavonol accumulation in response to the environment.

Rodrigo Loyola, Daniela Herrera, Abraham Mas, Darren Chern Jan Wong, Janine Höll, Erika Cavallini, Alessandra Amato, Akifumi Azuma, Tobias Ziegler, Felipe Aquea and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed, 2 pooled it
30.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 2 syntheses or guidelines pooled it, 137 citations in OpenAlex.

  1. Pooled it
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3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 6 countries.

Rodrigo LoyolaDepartamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile Departamento de Fruticultura y Enología, Facultad de Agronomía e Ingeniería Forestal, Pontificia Universidad Católica de Chile, Santiago, Chile.
Daniela HerreraDepartamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile.
Abraham MasCentre for Research in Agricultural Genomics-CSIC-IRTA-UAB-UB (CRAG), Campus UAB, 08193 Bellaterra, Barcelona, Spain.
Darren Chern Jan WongWine Research Centre, University of British Columbia, Vancouver, BC, Canada.
Janine HöllCentre for Organismal Studies Heidelberg, University of Heidelberg, D-69120 Heidelberg, Germany.
Erika CavalliniDepartment of Biotechnology, University of Verona, Italy.
Alessandra AmatoDepartment of Biotechnology, University of Verona, Italy.
Akifumi AzumaGrape and Persimmon Research Division, Institute of Fruit Tree and Tea Science, NARO, Higashihiroshima, 73992494, Japan.
Tobias ZieglerCentre for Organismal Studies Heidelberg, University of Heidelberg, D-69120 Heidelberg, Germany.
Felipe AqueaLaboratorio de Bioingeniería, Facultad de Ingeniería y Ciencias, Universidad Adolfo Ibáñez, Santiago, Chile Center for Applied Ecology and Sustainability, Santiago, Chile.
Simone Diego CastellarinWine Research Centre, University of British Columbia, Vancouver, BC, Canada.
Jochen BogsCentre for Organismal Studies Heidelberg, University of Heidelberg, D-69120 Heidelberg, Germany Weincampus Neustadt, DLR Rheinpfalz, D-67435 Neustadt, Germany.
Giovanni Battista TornielliDepartment of Biotechnology, University of Verona, Italy.
Alvaro Peña-NeiraDepartamento de Agroindustria y Enología, Facultad de Ciencias Agronómicas, Universidad de Chile, Santiago, Chile.
Stefan CzemmelQuantitative Biology Center (QBIC), University of Tuebingen, Germany.
José Antonio AlcaldeDepartamento de Fruticultura y Enología, Facultad de Agronomía e Ingeniería Forestal, Pontificia Universidad Católica de Chile, Santiago, Chile jalcalde@uc.cl tomas.matus@cragenomica.es parce@bio.puc.cl.
José Tomás MatusCentre for Research in Agricultural Genomics-CSIC-IRTA-UAB-UB (CRAG), Campus UAB, 08193 Bellaterra, Barcelona, Spain jalcalde@uc.cl tomas.matus@cragenomica.es parce@bio.puc.cl.ORCID 0000-0002-9196-1813
Patricio Arce-JohnsonDepartamento de Genética Molecular y Microbiología, Facultad de Ciencias Biológicas, Pontificia Universidad Católica de Chile, Santiago, Chile jalcalde@uc.cl tomas.matus@cragenomica.es parce@bio.puc.cl.
Pontificia Universidad Católica de Chile · CLHeidelberg University · DEUniversity of Verona · ITCenter for Research in Agricultural Genomics · ESUniversity of British Columbia · CAAdolfo Ibáñez University · CLInstitute of Fruit Tree and Tea Science · JPQuantitative Biology CenterUniversity of Chile · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Grapevine (Vitis vinifera L.) is a species well known for its adaptation to radiation. However, photomorphogenic factors related to UV-B responses have not been molecularly characterized. We cloned and studied the role of UV-B RECEPTOR (UVR1), ELONGATED HYPOCOTYL 5 (HY5), and HY5 HOMOLOGUE (HYH) from V. vinifera We performed gene functional characterizations, generated co-expression networks, and tested them in different environmental conditions. These genes complemented the Arabidopsis uvr8 and hy5 mutants in morphological and secondary metabolic responses to radiation. We combined microarray and RNA sequencing (RNA-seq) data with promoter inspections to identify HY5 and HYH putative target genes and their DNA binding preferences. Despite sharing a large set of common co-expressed genes, we found different hierarchies for HY5 and HYH depending on the organ and stress condition, reflecting both co-operative and partially redundant roles. New candidate UV-B gene markers were supported by the presence of HY5-binding sites. These included a set of flavonol-related genes that were up-regulated in a HY5 transient expression assay. We irradiated in vitro plantlets and fruits from old potted vines with high and low UV-B exposures and followed the accumulation of flavonols and changes in gene expression in comparison with non-irradiated conditions. UVR1, HY5, and HYH expression varied with organ, developmental stage, and type of radiation. Surprisingly, UVR1 expression was modulated by shading and temperature in berries, but not by UV-B radiation. We propose that the UV-B response machinery favours berry flavonol accumulation through the activation of HY5 and HYH at different developmental stages at both high and low UV-B exposures.

Indexed as

Cloning, MolecularFlavonolsFruitGene Expression Regulation, PlantGenes, PlantPlant ProteinsSignal TransductionTranscription FactorsUltraviolet RaysUp-RegulationVitisFlavonolsPlant ProteinsTranscription FactorsBindingglycosyltransferaseMYBF1networkphotolyaseripeningUVR8.

Identifiers

PMID27543604
PMCPMC5049392
OpenAlexW2510490633

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.