Evidence map›Paper›PMID 27543334›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Why Cockayne syndrome patients do not get cancer despite their DNA repair deficiency.

Kate S Reid-Bayliss, Sarah T Arron, Lawrence A Loeb, Vladimir Bezrookove, James E Cleaver

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Article
  3. Transcription-Coupled Repair and R-Loop Crosstalk in Genome Stability.International journal of molecular sciences · 2025
    Review
  4. Aging and cancer.Molecular cancer · 2024
    Review
  5. Presumed Pathogenic Germ Line and Somatic Variants in African American Thyroid Cancer.Thyroid : official journal of the American Thyroid Association · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Genomic Instability and Cancer Risk Associated with Erroneous DNA Repair.International journal of molecular sciences · 2021
    Review
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Kate S Reid-BaylissDepartment of Pathology, University of Washington, Seattle, WA 98195;
Sarah T ArronDepartment of Dermatology, University of California, San Francisco, CA 94143;
Lawrence A LoebDepartment of Pathology, University of Washington, Seattle, WA 98195;
Vladimir BezrookoveCalifornia Pacific Medical Center, San Francisco, CA 94107.
James E CleaverDepartment of Dermatology, University of California, San Francisco, CA 94143; james.cleaver@ucsf.edu.
University of California, San Francisco · USUniversity of Washington · USCalifornia Pacific Medical Center · US

Funding

University of Washington Medical Scientist Training Program: MD/PhDT32GM007266 · NIGMS · UNIVERSITY OF WASHINGTON · PI HORWITZ, MARSHALL S. · 1985 to 2023
$30.4M
Tumor mutation signaturesP01CA077852 · NCI · UNIVERSITY OF WASHINGTON · PI MONNAT, RAYMOND J · 1999 to 2019
$26.0M
Validation and Advanced Development of Duplex SequencingR33CA181771 · NCI · UNIVERSITY OF WASHINGTON · PI LOEB, LAWRENCE A · 2014 to 2016
$1.1M
NCI NIH HHS P01 CA077852NCI NIH HHS R33 CA181771NIGMS NIH HHS T32 GM007266
6 · The paper itself

Abstract

Cockayne syndrome (CS) and xeroderma pigmentosum (XP) are human photosensitive diseases with mutations in the nucleotide excision repair (NER) pathway, which repairs DNA damage from UV exposure. CS is mutated in the transcription-coupled repair (TCR) branch of the NER pathway and exhibits developmental and neurological pathologies. The XP-C group of XP patients have mutations in the global genome repair (GGR) branch of the NER pathway and have a very high incidence of UV-induced skin cancer. Cultured cells from both diseases have similar sensitivity to UV-induced cytotoxicity, but CS patients have never been reported to develop cancer, although they often exhibit photosensitivity. Because cancers are associated with increased mutations, especially when initiated by DNA damage, we examined UV-induced mutagenesis in both XP-C and CS cells, using duplex sequencing for high-sensitivity mutation detection. Duplex sequencing detects rare mutagenic events, independent of selection and in multiple loci, enabling examination of all mutations rather than just those that confer major changes to a specific protein. We found telomerase-positive normal and CS-B cells had increased background mutation frequencies that decreased upon irradiation, purging the population of subclonal variants. Primary XP-C cells had increased UV-induced mutation frequencies compared with normal cells, consistent with their GGR deficiency. CS cells, in contrast, had normal levels of mutagenesis despite their TCR deficiency. The lack of elevated UV-induced mutagenesis in CS cells reveals that their TCR deficiency, although increasing cytotoxicity, is not mutagenic. Therefore the absence of cancer in CS patients results from the absence of UV-induced mutagenesis rather than from enhanced lethality.

Indexed as

DNA RepairMutationCockayne SyndromeDNADNA Breaks, Double-StrandedFibroblastsHealthy VolunteersHumansKeratinocytesPrimary Cell CultureSequence Analysis, DNASkin NeoplasmsUltraviolet RaysXeroderma PigmentosumDNAapoptosisdipyrimidinesmutagenesisRNA pol IItranscription arrest

Identifiers

PMID27543334
PMCPMC5018765
OpenAlexW2507443637

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.