Evidence map›Paper›PMID 27543332›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Signal transmission through the CXC chemokine receptor 4 (CXCR4) transmembrane helices.

Melanie P Wescott, Irina Kufareva, Cheryl Paes, Jason R Goodman, Yana Thaker, Bridget A Puffer, Eli Berdougo, Joseph B Rucker, Tracy M Handel, Benjamin J Doranz

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed, 1 pooled it
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 1 synthesis or guideline pooled it, 138 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Article
  4. Article
  5. Atypical GPCR Activation Resolved by Nanobody Engineering.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Structural insights into CXCR4 modulation and oligomerization.Nature structural & molecular biology · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. The β2-adrenergic receptor associates with CXCR4 multimers in human cancer cells.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Review
  19. CXCR4 Is a Potential Target for Anti-HIV Gene Therapy.International journal of molecular sciences · 2024
    Review
  20. Review

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Melanie P WescottIntegral Molecular, Philadelphia, PA 19104;
Irina KufarevaSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093.
Cheryl PaesIntegral Molecular, Philadelphia, PA 19104;
Jason R GoodmanIntegral Molecular, Philadelphia, PA 19104;
Yana ThakerIntegral Molecular, Philadelphia, PA 19104;
Bridget A PufferIntegral Molecular, Philadelphia, PA 19104;
Eli BerdougoIntegral Molecular, Philadelphia, PA 19104;
Joseph B RuckerIntegral Molecular, Philadelphia, PA 19104;
Tracy M HandelSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093.
Benjamin J DoranzIntegral Molecular, Philadelphia, PA 19104; bdoranz@integralmolecular.com.
Integral Molecular (United States) · USUniversity of California, San Diego · USUniversity of Montana · US

Funding

Macromolecular DockingR01GM071872 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ABAGYAN, RUBEN · 2004 to 2017
$4.2M
The structural plasticity of chemokine and gp120 recognition by CCR5R01AI118985 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HANDEL, TRACY M, KUFAREVA, IRINA · 2015 to 2019
$2.7M
A Tool for Modeling the Structure-Activity of Chemokine Receptors and Other GPCRsR44GM076779 · NIGMS · INTEGRAL MOLECULAR · PI DORANZ, BENJAMIN J · 2007 to 2009
$2.2M
Chemokine interaction with CXCR4 and ACKR3: structure and activation mechanismsR01GM117424 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HANDEL, TRACY M, KUFAREVA, IRINA · 2016 to 2019
$2.2M
Dissecting the interactions of gp120 with chemokine receptor CXCR4R21AI121918 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HANDEL, TRACY M · 2016 to 2017
$426k
Structure Determination of the Chemokine Receptor CCR2 with Novel InhibitorsR21AI122211 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HANDEL, TRACY M · 2016 to 2017
$426k
NIAID NIH HHS R01 AI118985NIAID NIH HHS R21 AI121918NIAID NIH HHS R21 AI122211NIGMS NIH HHS R01 GM071872NIGMS NIH HHS R01 GM117424NIGMS NIH HHS R44 GM076779
6 · The paper itself

Abstract

The atomic-level mechanisms by which G protein-coupled receptors (GPCRs) transmit extracellular ligand binding events through their transmembrane helices to activate intracellular G proteins remain unclear. Using a comprehensive library of mutations covering all 352 residues of the GPCR CXC chemokine receptor 4 (CXCR4), we identified 41 amino acids that are required for signaling induced by the chemokine ligand CXCL12 (stromal cell-derived factor 1). CXCR4 variants with each of these mutations do not signal properly but remain folded, based on receptor surface trafficking, reactivity to conformationally sensitive monoclonal antibodies, and ligand binding. When visualized on the structure of CXCR4, the majority of these residues form a continuous intramolecular signaling chain through the transmembrane helices; this chain connects chemokine binding residues on the extracellular side of CXCR4 to G protein-coupling residues on its intracellular side. Integrated into a cohesive model of signal transmission, these CXCR4 residues cluster into five functional groups that mediate (i) chemokine engagement, (ii) signal initiation, (iii) signal propagation, (iv) microswitch activation, and (v) G protein coupling. Propagation of the signal passes through a "hydrophobic bridge" on helix VI that coordinates with nearly every known GPCR signaling motif. Our results agree with known conserved mechanisms of GPCR activation and significantly expand on understanding the structural principles of CXCR4 signaling.

Indexed as

Protein ConformationSignal TransductionAmino Acid SequenceBinding SitesChemokine CXCL12HEK293 CellsHumansLigandsModels, MolecularMutationProtein BindingProtein MultimerizationReceptors, CXCR4Sequence Homology, Amino AcidChemokine CXCL12CXCL12 protein, humanLigandsReceptors, CXCR4chemokine receptorGPCR activationG proteinhydrophobic bridgeshotgun mutagenesis

Identifiers

PMID27543332
PMCPMC5024644
OpenAlexW2517768455

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.