Evidence map›Paper›PMID 27543172›Full record

ArticleBMC infectious diseases2016

Prevalence of K13-propeller gene polymorphisms among Plasmodium falciparum parasites isolated from adult symptomatic patients in northern Uganda.

Moses Ocan, Freddie Bwanga, Alfred Okeng, Fred Katabazi, Edgar Kigozi, Samuel Kyobe, Jasper Ogwal-Okeng, Celestino Obua

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Article in BMC infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
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16citing papers in PubMed, 2 pooled it
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
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  5. Article
  6. Day 3 parasitemia andmedRxiv : the preprint server for health sciences · 2024
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  10. Limited Polymorphism inInfection and drug resistance · 2021
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  11. Article
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  14. Article
  15. Polymorphisms in the K13 Gene inThe American journal of tropical medicine and hygiene · 2018
    Article
  16. Prevalence ofInfection and drug resistance · 2018
    Article
4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Moses OcanDepartment of Pharmacology & Therapeutics, Makerere University, P. O. Box 7072, Kampala, Uganda. ocanmoses@gmail.com.
Freddie BwangaDepartment of Medical Microbiology, Makerere University, P. O. Box 7072, Kampala, Uganda.
Alfred OkengMBN Clinical Laboratories, P. O. Box 35135, Kampala, Uganda.
Fred KatabaziDepartment of Medical Microbiology, Makerere University, P. O. Box 7072, Kampala, Uganda.
Edgar KigoziDepartment of Medical Microbiology, Makerere University, P. O. Box 7072, Kampala, Uganda.
Samuel KyobeDepartment of Medical Microbiology, Makerere University, P. O. Box 7072, Kampala, Uganda.
Jasper Ogwal-OkengLira University, P. O. Box 1035, Lira, Uganda.
Celestino ObuaMbarara University of Science and Technology, P. O. Box 1410, Mbarara, Uganda.

Funding

Medical Education for Services to All Ugandans (MESAU)R24TW008886 · FIC · MAKERERE UNIVERSITY COLLEGE OF HEALTH SCIENCES · PI SEWANKAMBO, NELSON K · 2010 to 2015
$9.2M
FIC NIH HHS R24 TW008886
6 · The paper itself

Abstract

backgroundIn the absence of an effective vaccine, malaria treatment and eradication is still a challenge in most endemic areas globally. This is especially the case with the current reported emergence of resistance to artemisinin agents in Southeast Asia. This study therefore explored the prevalence of K13-propeller gene polymorphisms among Plasmodium falciparum parasites in northern Uganda.

methodsAdult patients (≥18 years) presenting to out-patients department of Lira and Gulu regional referral hospitals in northern Uganda were randomly recruited. Laboratory investigation for presence of plasmodium infection among patients was done using Plasmodium falciparum exclusive rapid diagnostic test, histidine rich protein-2 (HRP2) (Pf). Finger prick capillary blood from patients with a positive malaria test was spotted on a filter paper Whatman no. 903. The parasite DNA was extracted using chelex resin method and sequenced for mutations in K13-propeller gene using Sanger sequencing. PCR DNA sequence products were analyzed using in DNAsp 5.10.01software, data was further processed in Excel spreadsheet 2007.

resultsA total of 60 parasite DNA samples were sequenced. Polymorphisms in the K13-propeller gene were detected in four (4) of the 60 parasite DNA samples sequenced. A non-synonymous polymorphism at codon 533 previously detected in Cambodia was found in the parasite DNA samples analyzed. Polymorphisms at codon 522 (non-synonymous) and codon 509 (synonymous) were also found in the samples analyzed. The study found evidence of positive selection in the Plasmodium falciparum population in northern Uganda (Tajima's D = -1.83205; Fu and Li's D = -1.82458).

conclusionsPolymorphism in the K13-propeller gene previously reported in Cambodia has been found in the Ugandan Plasmodium falciparum parasites. There is need for continuous surveillance for artemisinin resistance gene markers in the country.

Indexed as

AdultAnimalsAntigens, ProtozoanAntimalarialsArtemisininsCodonDNA, ProtozoanDrug ResistanceHaplotypesHumansMalaria, FalciparumPlasmodium falciparumPolymorphism, Single NucleotidePrevalenceSequence Analysis, DNAUgandaAntigens, ProtozoanAntimalarialsartemisininArtemisininsCodonDNA, ProtozoanArtemisininMedicinesNorthern UgandaResistance

Identifiers

PMID27543172
PMCPMC4992308

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.