Evidence map›Paper›PMID 27543103›Full record

ArticleBMC genomics2016

Transcriptome analysis revealed that a quorum sensing system regulates the transfer of the pAt megaplasmid in Agrobacterium tumefaciens.

Nadia Mhedbi-Hajri, Noura Yahiaoui, Samuel Mondy, Nathalie Hue, Franck Pélissier, Denis Faure, Yves Dessaux

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Nadia Mhedbi-HajriInstitut for integrative biology of the cell, CEA, CNRS, Université Paris-sud, Université Paris-Saclay, 91198, Gif sur Yvette, CEDEX, France.
Noura YahiaouiInstitut for integrative biology of the cell, CEA, CNRS, Université Paris-sud, Université Paris-Saclay, 91198, Gif sur Yvette, CEDEX, France.
Samuel MondyInstitut for integrative biology of the cell, CEA, CNRS, Université Paris-sud, Université Paris-Saclay, 91198, Gif sur Yvette, CEDEX, France.
Nathalie HueInstitut de chimie des substances naturelles, CNRS, Avenue de la terrasse, 91198, Gif sur Yvette, France.
Franck PélissierInstitut de chimie des substances naturelles, CNRS, Avenue de la terrasse, 91198, Gif sur Yvette, France.
Denis FaureInstitut for integrative biology of the cell, CEA, CNRS, Université Paris-sud, Université Paris-Saclay, 91198, Gif sur Yvette, CEDEX, France.
Yves DessauxInstitut for integrative biology of the cell, CEA, CNRS, Université Paris-sud, Université Paris-Saclay, 91198, Gif sur Yvette, CEDEX, France. yves.dessaux@i2bc.paris-saclay.fr.
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAgrobacterium tumefaciens strain P4 is atypical, as the strain is not pathogenic and produces a for this species unusual quorum sensing signal, identified as N-(3-hydroxy-octanoyl)-homoserine lactone (3OH,C8-HSL).

resultsBy sequence analysis and cloning, a functional luxI-like gene, named cinI, has been identified on the At plasmid of A. tumefaciens strain P4. Insertion mutagenesis in the cinI gene and transcriptome analyses permitted the identification of 32 cinI-regulated genes in this strain, most of them encoding proteins responsible for the conjugative transfer of pAtP4. Among these genes were the avhB genes that encode a type 4 secretion system (T4SS) involved in the formation of the conjugation apparatus, the tra genes that encode the DNA transfer and replication (Dtr) machinery and cinI and two luxR orthologs. These last two genes, cinR and cinX, exhibit an unusual organization, with the cinI gene surrounded by the two luxR orthologs. Conjugation experiments confirmed that the conjugative transfer of pAtP4 is regulated by 3OH,C8-HSL. Root colonization experiments indicated that the quorum sensing regulation of the conjugation of the pAtP4 does not confer a gain or a loss of fitness to the bacterial host in the tomato plant rhizosphere.

conclusionThis work is the first identification of the occurrence of a quorum sensing regulation of the pAt conjugation phenomenon in Agrobacterium.

Indexed as

Quorum SensingAgrobacterium tumefaciensBacterial ProteinsCloning, MolecularConjugation, GeneticGene Expression ProfilingGene Expression Regulation, BacterialGenetic FitnessPhylogenyPlant RootsPlasmidsSequence Analysis, RNASolanum lycopersicumBacterial ProteinsAcylhomoserine lactoneAgrobacteriumAt plasmidConjugationDtr systemQuorum sensingT4SSTranscriptomics

Identifiers

PMID27543103
PMCPMC4992315
OpenAlexW2508894182

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.