Evidence map›Paper›PMID 27542508›Full record

ReviewBiophysical journal2016

Following Optogenetic Dimerizers and Quantitative Prospects.

Jacqueline Niu, Manu Ben Johny, Ivy E Dick, Takanari Inoue

Open access · bronzeAbstract readReview
In one paragraph

Review in Biophysical journal, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Light-Induced Dimerization Approaches to Control Cellular Processes.Chemistry (Weinheim an der Bergstrasse, Germany) · 2019
    Review
  10. Article
  11. Article
  12. Article
  13. Optochemical Control of Biological Processes in Cells and Animals.Angewandte Chemie (International ed. in English) · 2018
    Review
  14. Article
  15. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Jacqueline NiuDepartment of Biomedical Engineering, School of Medicine, The Johns Hopkins University, Baltimore, Maryland. Electronic address: jniu4@jhu.edu.
Manu Ben JohnyDepartment of Biomedical Engineering, School of Medicine, The Johns Hopkins University, Baltimore, Maryland.
Ivy E DickDepartment of Biomedical Engineering, School of Medicine, The Johns Hopkins University, Baltimore, Maryland; Department of Physiology, University of Maryland School of Medicine, Baltimore, Maryland.
Takanari InoueDepartment of Biomedical Engineering, School of Medicine, The Johns Hopkins University, Baltimore, Maryland; Department of Cell Biology, School of Medicine, The Johns Hopkins University, Baltimore, Maryland; The Center for Cell Dynamics, Institute for Basic Biomedical Sciences, The Johns Hopkins University, Baltimore, Maryland; Precursory Research for Embryonic Science and Technology, Japan Science and Technology Agency, Saitama, Japan. Electronic address: jctinoue@jhmi.edu.
Johns Hopkins Medicine · USJohns Hopkins University · US

Funding

Flow sensation by kidney cellsR01DK102910 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI INOUE, TAKANARI · 2014 to 2017
$1.6M
Chemical biological dissection of Ca2+ entry through Ca2+ channelsR01NS085074 · NINDS · UNIVERSITY OF MARYLAND BALTIMORE · PI DICK, IVY E · 2013 to 2016
$1.3M
NIDDK NIH HHS R01 DK102910NINDS NIH HHS R01 NS085074
6 · The paper itself

Abstract

Optogenetics describes the use of genetically encoded photosensitive proteins to direct intended biological processes with light in recombinant and native systems. While most of these light-responsive proteins were originally discovered in photosynthetic organisms, the past few decades have been punctuated by experiments that not only commandeer but also engineer and enhance these natural tools to explore a wide variety of physiological questions. In addition, the ability to tune dynamic range and kinetic rates of optogenetic actuators is a challenging question that is heavily explored with computational methods devised to facilitate optimization of these systems. Here, we explain the basic mechanisms of a few popular photodimerizing optogenetic systems, discuss applications, compare optogenetic tools against more traditional chemical methods, and propose a simple quantitative understanding of how actuators exert their influence on targeted processes.

Indexed as

OptogeneticsAnimalsLuminescent ProteinsModels, MolecularPlantsProtein MultimerizationLuminescent Proteins

Identifiers

PMID27542508
PMCPMC5034304
OpenAlexW2513345744

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.