Evidence map›Paper›PMID 27541869›Full record

ArticlePloS one2016

Recombinase-Mediated Cassette Exchange (RMCE)-in Reporter Cell Lines as an Alternative to the Flp-in System.

Morten M Callesen, Martin F Berthelsen, Sira Lund, Annette C Füchtbauer, Ernst-Martin Füchtbauer, Jannik E Jakobsen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Morten M CallesenDepartment of Biomedicine, Faculty of Health, Aarhus University, Aarhus C, Denmark.ORCID http://orcid.org/0000-0001-6258-2171
Martin F BerthelsenDepartment of Biomedicine, Faculty of Health, Aarhus University, Aarhus C, Denmark.
Sira LundDepartment of Biomedicine, Faculty of Health, Aarhus University, Aarhus C, Denmark.
Annette C FüchtbauerDepartment of Molecular Biology and Genetics, Aarhus University, Aarhus C, Denmark.
Ernst-Martin FüchtbauerDepartment of Molecular Biology and Genetics, Aarhus University, Aarhus C, Denmark.
Jannik E JakobsenDepartment of Biomedicine, Faculty of Health, Aarhus University, Aarhus C, Denmark.
Aarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recombinase mediated cassette exchange (RMCE) is a powerful tool for targeted insertion of transgenes. Here we describe non-proprietary 'RMCE-in' cell lines as an alternative to the 'Flp-in' system and cell lines. RMCE-in cell lines offer a number of advantages including increased efficiency of integration of the genetic element of interest (GEI) at a single docking site, lack of bacterial backbone at the docking site both before and after GEI integration, removal of selection and visual markers initially present at the docking site upon GEI integration and the possibility to validate GEI integration by loss of a red fluorescence reporter. Moreover, the RMCE-in cell lines are compatible with GEI donors used for the Flp-in system. We demonstrate a three-step procedure for generating RMCE-in cell lines, (I) RMCE-in transposon and SB10 transposase transfection, (II) clone isolation, and (III) selecting single integrated clones with highest RFP level, which could in principle be used to turn any cell line into an RMCE-in cell line. The RMCE-in system was used as a proof of concept to produce three new RMCE-in cell lines using HEK293, HeLa, and murine embryonic stem (mES) cells. The established RMCE-in cell lines and vector are freely available from the ATCC cell bank and Addgene respectively.

Indexed as

Gene TargetingGenetic VectorsRecombination, GeneticBase SequenceDNA NucleotidyltransferasesGenes, ReporterGenomicsHEK293 CellsHeLa CellsHumansRecombinasesDNA NucleotidyltransferasesFLP recombinaseRecombinases

Identifiers

PMID27541869
PMCPMC4991790
OpenAlexW2514214836

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.