Evidence map›Paper›PMID 27540112›Full record

ArticleThe Journal of infectious diseases2016

Density, Serotype Diversity, and Fitness of Streptococcus pneumoniae in Upper Respiratory Tract Cocolonization With Nontypeable Haemophilus influenzae.

Joseph A Lewnard, Amit Huppert, Noga Givon-Lavi, Melinda M Pettigrew, Gili Regev-Yochay, Ron Dagan, Daniel M Weinberger

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Immunization with recombinantExperimental biology and medicine (Maywood, N.J.) · 2024
    Article
  5. Article
  6. Article
  7. Serotype Patterns of Pneumococcal Disease in Adults Are Correlated With Carriage Patterns in Older Children.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2021
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Experimental EvolutionmSystems · 2020
    Article
  13. Review
  14. Article
  15. Observational
  16. From Culturomics to Clinical Microbiology and Forward.Emerging infectious diseases · 2018
    Article
  17. Article
  18. Review
  19. Article
  20. Pan-serotype Reduction in Progression of Streptococcus pneumoniae to Otitis Media After Rollout of Pneumococcal Conjugate Vaccines.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Joseph A LewnardDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Amit HuppertSection of Biostatistics.
Noga Givon-LaviPediatric Infectious Disease Unit, Soroka University Medical Center.
Melinda M PettigrewDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Gili Regev-YochaySection of Infectious Disease Epidemiology, Gertner Institute for Epidemiology and Health Policy Research.
Ron DaganFaculty of Health Sciences, Ben-Gurion University of the Negev, Beer Sheva, Israel.
Daniel M WeinbergerDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut.
Yale University · USBen-Gurion University of the Negev · ILCancer Research And Biostatistics · USSheba Medical Center · ILUniversity Medical Center · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Study Support Suite (YES3): Dashboard and Web Portal Software Supporting Research Workflow through integrated, customizable REDCap External ModulesP30AG021342 · NIA · YALE UNIVERSITY · PI Denise Esserman · 2002 to 2026
$37.9M
Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
Forecasting pneumococcal serotype frequencies to develop adult-specific vaccinesR01AI123208 · NIAID · YALE UNIVERSITY · PI WEINBERGER, DANIEL MARTIN · 2016 to 2019
$2.5M
Forecasting pneumococcal serotype frequencies to develop adult-specific vaccinesR56AI110449 · NIAID · YALE UNIVERSITY · PI WEINBERGER, DANIEL MARTIN · 2015 to 2015
$427k
NCATS NIH HHS UL1 TR000142NCATS NIH HHS UL1 TR001863NIAID NIH HHS R01 AI123208NIAID NIH HHS R56 AI110449NIA NIH HHS P30 AG021342
6 · The paper itself

Abstract

backgroundCoinfections by Streptococcus pneumoniae and nontypeable Haemophilus influenzae (NTHi) are frequently implicated in complex otitis media. Whereas upper respiratory tract carriage precedes disease for both pathogens, interactions between species in cocolonized hosts are poorly understood. We compared colonization densities and the diversity and fitness of pneumococcal serotypes in single-species and mixed-species colonization.

methodsWe analyzed nasopharyngeal pneumococcal carriage and nasopharyngeal and oropharyngeal NTHi carriage in 13 541 samples collected over 6909 study visits from 769 children 2-30 months old in a 7-valent pneumococcal conjugate vaccine dosing trial. We measured density associations between the species and compared pneumococcal serotype diversity during and in the absence of NTHi colonization. We used logistic regression to quantify associations between NTHi colonization and previously published pneumococcal serotype factors related to fitness.

resultsDensities of the 2 species were positively associated when they co-occur in the nasopharynx. NTHi colonization was associated with reduced pneumococcal serotype diversity among children 2-18 months old and was more prevalent among children carrying pneumococcal serotypes with greater capsular thickness, neutrophil resistance, and metabolic efficiency.

conclusionsPneumococcal-NTHi cocolonization is associated with an elevated density of both species and with reduced diversity and increased fitness of pneumococcal serotypes. NTHi colonization may create a selective environment favoring pneumococci with immune-evasive phenotypes.

Indexed as

Carrier StateChild, PreschoolCoinfectionFemaleHaemophilus InfectionsHaemophilus influenzaeHumansInfantMaleNasopharynxOropharynxOtitis MediaPneumococcal InfectionsPneumococcal VaccinesRespiratory Tract InfectionsSerogroupPneumococcal VaccinesVaccines, Conjugatecarriagecoinfectioninterspecies interactionnasopharynxnontypeable Haemophilus influenzaeStreptococcus pneumoniae

Identifiers

PMID27540112
PMCPMC5079371
OpenAlexW2512308893

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.