Evidence map›Paper›PMID 27540109›Full record

ArticlePlant physiology2016

The Dehydratase ADT3 Affects ROS Homeostasis and Cotyledon Development.

Alessia Para, DurreShahwar Muhammad, Danielle A Orozco-Nunnelly, Ramis Memishi, Sophie Alvarez, Michael J Naldrett, Katherine M Warpeha

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
9.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

  1. A multiplant transcriptomic atlas reveals conserved and lineage-specific defense architectures in response toProceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Alessia ParaWeinberg College of Art and Science, Northwestern University, Evanston, Illinois 60208 (A.P.);Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois 60607 (D.M., D.A.O.-N., R.M., K.M.W.); andProteomics and Mass Spectrometry Facility, Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (S.A., M.J.N.).
DurreShahwar MuhammadWeinberg College of Art and Science, Northwestern University, Evanston, Illinois 60208 (A.P.);Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois 60607 (D.M., D.A.O.-N., R.M., K.M.W.); andProteomics and Mass Spectrometry Facility, Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (S.A., M.J.N.).
Danielle A Orozco-NunnellyWeinberg College of Art and Science, Northwestern University, Evanston, Illinois 60208 (A.P.);Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois 60607 (D.M., D.A.O.-N., R.M., K.M.W.); andProteomics and Mass Spectrometry Facility, Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (S.A., M.J.N.).ORCID 0000-0003-3381-0504
Ramis MemishiWeinberg College of Art and Science, Northwestern University, Evanston, Illinois 60208 (A.P.);Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois 60607 (D.M., D.A.O.-N., R.M., K.M.W.); andProteomics and Mass Spectrometry Facility, Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (S.A., M.J.N.).ORCID 0000-0001-7662-2437
Sophie AlvarezWeinberg College of Art and Science, Northwestern University, Evanston, Illinois 60208 (A.P.);Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois 60607 (D.M., D.A.O.-N., R.M., K.M.W.); andProteomics and Mass Spectrometry Facility, Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (S.A., M.J.N.).ORCID 0000-0001-8550-2832
Michael J NaldrettWeinberg College of Art and Science, Northwestern University, Evanston, Illinois 60208 (A.P.);Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois 60607 (D.M., D.A.O.-N., R.M., K.M.W.); andProteomics and Mass Spectrometry Facility, Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (S.A., M.J.N.).
Katherine M WarpehaWeinberg College of Art and Science, Northwestern University, Evanston, Illinois 60208 (A.P.);Department of Biological Sciences, University of Illinois at Chicago, Chicago, Illinois 60607 (D.M., D.A.O.-N., R.M., K.M.W.); andProteomics and Mass Spectrometry Facility, Donald Danforth Plant Science Center, St. Louis, Missouri 63132 (S.A., M.J.N.) kwarpeha@uic.edu.
University of Illinois Chicago · USDonald Danforth Plant Science Center · USNorthwestern University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the transition from seed to seedling, emerging embryos strategically balance available resources between building up defenses against environmental threats and initiating the developmental program that promotes the switch to autotrophy. We present evidence of a critical role for the phenylalanine (Phe) biosynthetic activity of AROGENATE DEHYDRATASE3 (ADT3) in coordinating reactive oxygen species (ROS) homeostasis and cotyledon development in etiolated Arabidopsis (Arabidopsis thaliana) seedlings. We show that ADT3 is expressed in the cotyledon and shoot apical meristem, mainly in the cytosol, and that the epidermis of adt3 cotyledons contains higher levels of ROS Genome-wide proteomics of the adt3 mutant revealed a general down-regulation of plastidic proteins and ROS-scavenging enzymes, corroborating the hypothesis that the ADT3 supply of Phe is required to control ROS concentration and distribution to protect cellular components. In addition, loss of ADT3 disrupts cotyledon epidermal patterning by affecting the number and expansion of pavement cells and stomata cell fate specification; we also observed severe alterations in mesophyll cells, which lack oil bodies and normal plastids. Interestingly, up-regulation of the pathway leading to cuticle production is accompanied by an abnormal cuticle structure and/or deposition in the adt3 mutant. Such impairment results in an increase in cell permeability and provides a link to understand the cell defects in the adt3 cotyledon epidermis. We suggest an additional role of Phe in supplying nutrients to the young seedling.

Indexed as

HomeostasisArabidopsis ProteinsChromatography, LiquidCotyledonGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantMeristemMesophyll CellsMicroscopy, ConfocalMicroscopy, Electron, TransmissionMutationPhenylalaninePlant EpidermisPlants, Genetically ModifiedPrephenate DehydrogenaseProteomeArabidopsis Proteinscyclohexadienyl dehydrogenasePhenylalaninePrephenate DehydrogenaseProteomeReactive Oxygen Species

Identifiers

PMID27540109
PMCPMC5047074
OpenAlexW2509240253

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.