Evidence map›Paper›PMID 27539938›Full record

ArticleHuman mutation2016

Acute Intermittent Porphyria: Predicted Pathogenicity of HMBS Variants Indicates Extremely Low Penetrance of the Autosomal Dominant Disease.

Brenden Chen, Constanza Solis-Villa, Jörg Hakenberg, Wanqiong Qiao, Ramakrishnan R Srinivasan, Makiko Yasuda, Manisha Balwani, Dana Doheny, Inga Peter, Rong Chen and 1 more

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed, 2 pooled it
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 2 syntheses or guidelines pooled it, 163 citations in OpenAlex.

  1. Guideline
  2. Clinical feature and genetic analysis ofFrontiers in genetics · 2023
    Pooled it
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. A Prospective, Blinded Study of Symptom Prevalence and Specificity of Porphyrin Precursors in Carriers of Acute Hepatic Porphyria.Liver international : official journal of the International Association for the Study of the Liver · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Practical recommendations for biochemical and genetic diagnosis of the porphyrias.Liver international : official journal of the International Association for the Study of the Liver · 2025
    Review
  14. Article
  15. Article
  16. Drug-associated porphyria: a pharmacovigilance study.Orphanet journal of rare diseases · 2024
    Article
  17. Article
  18. Review
  19. Review
  20. Article

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Brenden ChenDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York.
Constanza Solis-VillaDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York.
Jörg HakenbergDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York.
Wanqiong QiaoDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York.
Ramakrishnan R SrinivasanDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York.
Makiko YasudaDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York.
Manisha BalwaniDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York.
Dana DohenyDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York.
Inga PeterDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York.
Rong ChenDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York.
Robert J DesnickDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York City, New York. robert.desnick@mssm.edu.
Icahn School of Medicine at Mount Sinai · US

Funding

Porphyrias Consortium: SupplementU54DK083909 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI DESNICK, ROBERT J · 2009 to 2023
$18.5M
T32 training grant in medical genetics.T32GM082773 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Laszlo Tamas Kozicz, Eva Morava-Kozicz · 2008 to 2026
$4.9M
Clinical and Molecular Studies of the Erythropoietic Protoporphyria PhenotypeK23DK095946 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BALWANI, MANISHA · 2013 to 2017
$906k
NIDDK NIH HHS K23 DK095946NIDDK NIH HHS U54 DK083909NIGMS NIH HHS T32 GM082773
6 · The paper itself

Abstract

Acute intermittent porphyria results from hydroxymethylbilane synthase (HMBS) mutations that markedly decrease HMBS enzymatic activity. This dominant disease is diagnosed when heterozygotes have life-threatening acute attacks, while most heterozygotes remain asymptomatic and undiagnosed. Although >400 HMBS mutations have been reported, the prevalence of pathogenic HMBS mutations in genomic/exomic databases, and the actual disease penetrance are unknown. Thus, we interrogated genomic/exomic databases, identified non-synonymous variants (NSVs) and consensus splice-site variants (CSSVs) in various demographic/racial groups, and determined the NSV's pathogenicity by prediction algorithms and in vitro expression assays. Caucasians had the most: 58 NSVs and two CSSVs among ∼92,000 alleles, a 0.00575 combined allele frequency. In silico algorithms predicted 14 out of 58 NSVs as "likely-pathogenic." In vitro expression identified 10 out of 58 NSVs as likely-pathogenic (seven predicted in silico), which together with two CSSVs had a combined allele frequency of 0.00056. Notably, six presumably pathogenic mutations/NSVs in the Human Gene Mutation Database were benign. Compared with the recent prevalence estimate of symptomatic European heterozygotes (∼0.000005), the prevalence of likely-pathogenic HMBS mutations among Caucasians was >100 times more frequent. Thus, the estimated penetrance of acute attacks was ∼1% of heterozygotes with likely-pathogenic mutations, highlighting the importance of predisposing/protective genes and environmental modifiers that precipitate/prevent the attacks.

Indexed as

Genetic VariationPenetranceComputer SimulationFemaleGene FrequencyHumansMalePorphyria, Acute IntermittentSequence Analysis, DNAWhite Peopleallele frequencyallele prevalencedisease penetrancein silico predictionin vitro expression

Identifiers

PMID27539938
PMCPMC5063710
OpenAlexW2507658028

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.