Evidence map›Paper›PMID 27539887›Full record

ArticleNature communications2016

Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma.

Harvind S Chahal, Wenting Wu, Katherine J Ransohoff, Lingyao Yang, Haley Hedlin, Manisha Desai, Yuan Lin, Hong-Ji Dai, Abrar A Qureshi, Wen-Qing Li and 5 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 9 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 9 pooled it
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 9 syntheses or guidelines pooled it, 108 citations in OpenAlex.

  1. Pooled it
  2. Systematic review on gene-sun exposure interactions in skin cancer.Molecular genetics & genomic medicine · 2023
    Pooled it
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  18. JID innovations : skin science from molecules to population health · 2025
    Article
  19. Assessment of the Influence of UVR in Cutaneous Melanoma.Photodermatology, photoimmunology & photomedicine · 2025
    Review
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Harvind S ChahalDepartment of Dermatology, Stanford University School of Medicine, Stanford, California 94305, USA.
Wenting WuDepartment of Epidemiology, Richard M. Fairbanks School of Public Health, Melvin &Bren Simon Cancer Center, Indiana University, Indianapolis, Indiana 46202, USA.
Katherine J RansohoffDepartment of Dermatology, Stanford University School of Medicine, Stanford, California 94305, USA.
Lingyao YangDepartment of Medicine (Quantitative Sciences Unit), Stanford University School of Medicine, Stanford, California 94305, USA.
Haley HedlinDepartment of Medicine (Quantitative Sciences Unit), Stanford University School of Medicine, Stanford, California 94305, USA.
Manisha DesaiDepartment of Medicine (Quantitative Sciences Unit), Stanford University School of Medicine, Stanford, California 94305, USA.
Yuan LinDepartment of Epidemiology, Richard M. Fairbanks School of Public Health, Melvin &Bren Simon Cancer Center, Indiana University, Indianapolis, Indiana 46202, USA.
Hong-Ji DaiDepartment of Epidemiology, Richard M. Fairbanks School of Public Health, Melvin &Bren Simon Cancer Center, Indiana University, Indianapolis, Indiana 46202, USA.
Abrar A QureshiDepartment of Dermatology, Warren Alpert Medical School, Brown University, Providence, Rhode Island 02903, USA.
Wen-Qing LiDepartment of Dermatology, Warren Alpert Medical School, Brown University, Providence, Rhode Island 02903, USA.
Peter KraftDepartment of Epidemiology, Harvard T.H. Chan School of Public Health, Boston, Massachusetts 02115, USA.
David A Hinds23andMe Inc., Mountain View, California 94040, USA.
Jean Y TangDepartment of Dermatology, Stanford University School of Medicine, Stanford, California 94305, USA.
Jiali HanDepartment of Epidemiology, Richard M. Fairbanks School of Public Health, Melvin &Bren Simon Cancer Center, Indiana University, Indianapolis, Indiana 46202, USA.
Kavita Y SarinDepartment of Dermatology, Stanford University School of Medicine, Stanford, California 94305, USA.
Stanford University · USHarvard University · USIndiana University – Purdue University Indianapolis · US23andMe (United States) · USBrigham and Women's Hospital · USBrown University · USIndiana University Health · US

Funding

Statistical MethodsP01CA087969 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ROSNER, BERNARD A · 2000 to 2019
$77.8M
Translational Oncology Research Program (Project-005)P30CA124435 · NCI · STANFORD UNIVERSITY · PI Vittorio Sebastiano · 2007 to 2026
$71.4M
Indiana Clinical and Translational Sciences InstituteUL1TR001108 · NCATS · INDIANA UNIVERSITY INDIANAPOLIS · PI DENNE, SCOTT C., SHEKHAR, ANANTHA · 2013 to 2017
$23.3M
Long Term Multidisciplinary Study of Cancer in Women: The Nurses Health StudyUM1CA186107 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ELIASSEN, A. HEATHER, STAMPFER, MEIR · 2014 to 2023
$22.3M
Cancer Epidemiology Cohort in Male Health ProfessionalsUM1CA167552 · NCI · HARVARD SCHOOL OF PUBLIC HEALTH · PI WILLETT, WALTER C. · 2012 to 2016
$11.5M
BIOCHEMICAL MARKERS IN THE NURSES'HEALTH STUDY COHORTR01CA049449 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI HANKINSON, SUSAN E · 1989 to 2008
$11.3M
Development of a web-based database and research engine for genetic discoveryR44HG006981 · NHGRI · 23ANDME, INC. · PI MOUNTAIN, JOANNA L. · 2013 to 2014
$1.4M
NCATS NIH HHS UL1 TR001108NCI NIH HHS P01 CA087969NCI NIH HHS P30 CA124435NCI NIH HHS R01 CA049449NCI NIH HHS UM1 CA167552NCI NIH HHS UM1 CA186107NHGRI NIH HHS R44 HG006981
6 · The paper itself

Abstract

Basal cell carcinoma (BCC) is the most common cancer worldwide with an annual incidence of 2.8 million cases in the United States alone. Previous studies have demonstrated an association between 21 distinct genetic loci and BCC risk. Here, we report the results of a two-stage genome-wide association study of BCC, totalling 17,187 cases and 287,054 controls. We confirm 17 previously reported loci and identify 14 new susceptibility loci reaching genome-wide significance (P<5 × 10(-8), logistic regression). These newly associated SNPs lie within predicted keratinocyte regulatory elements and in expression quantitative trait loci; furthermore, we identify candidate genes and non-coding RNAs involved in telomere maintenance, immune regulation and tumour progression, providing deeper insight into the pathogenesis of BCC.

Indexed as

Genetic Predisposition to DiseaseGenome-Wide Association StudyAdultAllelesBasal Cell CarcinomaCase-Control StudiesDisease ProgressionFemaleGenotypeHumansKeratinocytesMaleMiddle AgedQuantitative Trait LociRNA, UntranslatedSkinRNA, Untranslated

Identifiers

PMID27539887
PMCPMC4992160
OpenAlexW2517068497

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.