ArticleScientific reports2016
Transcriptome response of cassava leaves under natural shade.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 55 citations in OpenAlex.
- Effects of Cassava-Chili Intercropping at Different Planting Densities on Soil Bacterial Community Structure.Microorganisms · 2026Article
- Integrated omics revealed regulatory mechanisms governing potato (Solanum tuberosum L.) seedling growth during shade avoidance syndrome.BMC plant biology · 2026Article
- Efficient photosynthesis and economic water use of citrus leaves depend on hybrid, cultivar and leaf type.Frontiers in plant science · 2025Article
- Extensive post-transcriptional regulation revealed by integrative transcriptome and proteome analyses in salicylic acid-induced flowering in duckweed (Frontiers in plant science · 2024Article
- Seedling growth and photosynthetic response ofPlant signaling & behavior · 2023Article
- Recent Developments in Cassava (Materials (Basel, Switzerland) · 2022Review
- Effect of Light Intensity on Morphology, Photosynthesis and Carbon Metabolism of Alfalfa (Plants (Basel, Switzerland) · 2022Article
- Current status and impending progress for cassava structural genomics.Plant molecular biology · 2022Review
- Integrated metabolomic and transcriptomic analyses reveal different metabolite biosynthesis profiles ofFrontiers in plant science · 2022Article
- Integrated Metabolomic and Transcriptomic Analyses Reveal Novel Insights of Anthocyanin Biosynthesis on Color Formation in Cassava Tuberous Roots.Frontiers in nutrition · 2022Article
- Monoseeding Increases Peanut (Plants (Basel, Switzerland) · 2021Article
- Comparative physiological and transcriptomic analysis of pear leaves under distinct training systems.Scientific reports · 2020Article
- Physiological and comparative proteomic analysis provides new insights into the effects of shade stress in maize (Zea mays L.).BMC plant biology · 2020Article
- Transcriptional and physiological analyses of reduced density in apple provide insight into the regulation involved in photosynthesis.PloS one · 2020Article
- De novo assembly, transcriptome characterization, and simple sequence repeat marker development in duckweedPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Full-length transcriptome analysis of shade-induced promotion of tuber production in Pinellia ternata.BMC plant biology · 2019Article
- Article
- Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava.BMC genomics · 2019Article
- Transcriptome profiling of coriander: a dual purpose crop unravels stem gall resistance genes.Journal of genetics · 2019Article
- Multiple Pathways in the Control of the Shade Avoidance Response.Plants (Basel, Switzerland) · 2018Review
Corrections and comments
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Authors and funding
12 authors at 7 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cassava is an important staple crop in tropical and sub-tropical areas. As a common farming practice, cassava is usually cultivated intercropping with other crops and subjected to various degrees of shading, which causes reduced productivity. Herein, a comparative transcriptomic analysis was performed on a series of developmental cassava leaves under both full sunlight and natural shade conditions. Gene expression profiles of these two conditions exhibited similar developmental transitions, e.g. genes related to cell wall and basic cellular metabolism were highly expressed in immature leaves, genes involved in lipid metabolism and tetrapyrrole synthesis were highly expressed during the transition stages, and genes related to photosynthesis and carbohydrates metabolism were highly expressed in mature leaves. Compared with the control, shade significantly induced the expression of genes involved in light reaction of photosynthesis, light signaling and DNA synthesis/chromatin structure; however, the genes related to anthocyanins biosynthesis, heat shock, calvin cycle, glycolysis, TCA cycle, mitochondrial electron transport, and starch and sucrose metabolisms were dramatically depressed. Moreover, the shade also influenced the expression of hormone-related genes and transcriptional factors. The findings would improve our understanding of molecular mechanisms of shade response, and shed light on pathways associated with shade-avoidance syndrome for cassava improvement.
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