Evidence map›Paper›PMID 27538822›Full record

ArticleJournal of lipid research2016

Polyhedral 3D structure of human plasma very low density lipoproteins by individual particle cryo-electron tomography1.

Yadong Yu, Yu-Lin Kuang, Dongsheng Lei, Xiaobo Zhai, Meng Zhang, Ronald M Krauss, Gang Ren

Open access · hybridAbstract read
In one paragraph

Article in Journal of lipid research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 35 citations in OpenAlex.

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  13. Isolation of Small Extracellular Vesicles from Human Sera.International journal of molecular sciences · 2021
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  17. APOE in the normal brain.Neurobiology of disease · 2020
    Review
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  20. Single-molecule 3D imaging of human plasma intermediate-density lipoproteins reveals a polyhedral structure.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yadong YuMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Yu-Lin KuangAtherosclerosis Research, Children's Hospital Oakland Research Institute, Oakland, CA 94609.
Dongsheng LeiMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Xiaobo ZhaiMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Meng ZhangMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Ronald M KraussAtherosclerosis Research, Children's Hospital Oakland Research Institute, Oakland, CA 94609.
Gang RenMolecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA 94720. Electronic address: gren@lbl.gov.
Lawrence Berkeley National Laboratory · US

Funding

Structure-Function Relationship Studies of the Plasma Lipid Transfer Proteins CETP and PLTPR01HL115153 · NHLBI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI REN, GANG · 2012 to 2021
$3.9M
Lipoprotein Structure and Function by Individual Particle Electron TomographyR01GM104427 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI REN, GANG · 2013 to 2016
$1.3M
NHLBI NIH HHS R01 HL115153NIGMS NIH HHS R01 GM104427
6 · The paper itself

Abstract

Human VLDLs assembled in the liver and secreted into the circulation supply energy to peripheral tissues. VLDL lipolysis yields atherogenic LDLs and VLDL remnants that strongly correlate with CVD. Although the composition of VLDL particles has been well-characterized, their 3D structure is elusive because of their variations in size, heterogeneity in composition, structural flexibility, and mobility in solution. Here, we employed cryo-electron microscopy and individual-particle electron tomography to study the 3D structure of individual VLDL particles (without averaging) at both below and above their lipid phase transition temperatures. The 3D reconstructions of VLDL and VLDL bound to antibodies revealed an unexpected polyhedral shape, in contrast to the generally accepted model of a spherical emulsion-like particle. The smaller curvature of surface lipids compared with HDL may also reduce surface hydrophobicity, resulting in lower binding affinity to the hydrophobic distal end of the N-terminal β-barrel domain of cholesteryl ester transfer protein (CETP) compared with HDL. The directional binding of CETP to HDL and VLDL may explain the function of CETP in transferring TGs and cholesteryl esters between these particles. This first visualization of the 3D structure of VLDL could improve our understanding of the role of VLDL in atherogenesis.

Indexed as

Models, MolecularCryoelectron MicroscopyHumansLipoproteins, VLDLProtein DomainsLipoproteins, VLDLantibodiesapolipoprotein Belectron microscopythree-dimensional

Identifiers

PMID27538822
PMCPMC5036368
OpenAlexW2507645869

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.