Evidence map›Paper›PMID 27536728›Full record

ArticleScience advances2016

Structural photoactivation of a full-length bacterial phytochrome.

Alexander Björling, Oskar Berntsson, Heli Lehtivuori, Heikki Takala, Ashley J Hughes, Matthijs Panman, Maria Hoernke, Stephan Niebling, Léocadie Henry, Robert Henning and 9 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
21.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 118 citations in OpenAlex.

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  18. The structural effect between the output module and chromophore-binding domain is a two-way street via the hairpin extension.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article
  19. Article
  20. Characterisation of sequence-structure-function space in sensor-effector integrators of phytochrome-regulated diguanylate cyclases.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
    Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 5 countries.

Alexander BjörlingUniversity of Gothenburg, 40530 Gothenburg, Sweden.
Oskar BerntssonUniversity of Gothenburg, 40530 Gothenburg, Sweden.
Heli LehtivuoriUniversity of Jyväskylä, 40014 Jyväskylä, Finland.
Heikki TakalaUniversity of Gothenburg, 40530 Gothenburg, Sweden.; University of Jyväskylä, 40014 Jyväskylä, Finland.
Ashley J HughesUniversity of Gothenburg, 40530 Gothenburg, Sweden.ORCID 0000-0002-9468-7442
Matthijs PanmanUniversity of Gothenburg, 40530 Gothenburg, Sweden.ORCID 0000-0003-3853-123X
Maria HoernkeUniversity of Gothenburg, 40530 Gothenburg, Sweden.
Stephan NieblingUniversity of Gothenburg, 40530 Gothenburg, Sweden.
Léocadie HenryUniversity of Gothenburg, 40530 Gothenburg, Sweden.ORCID 0000-0002-0500-820X
Robert HenningUniversity of Chicago, Chicago, IL 60637, USA.
Irina KoshelevaUniversity of Chicago, Chicago, IL 60637, USA.
Vladimir ChukharevTampere University of Technology, 33720 Tampere, Finland.ORCID 0000-0002-3076-8948
Nikolai V TkachenkoTampere University of Technology, 33720 Tampere, Finland.ORCID 0000-0002-8504-2335
Andreas MenzelPaul Scherrer Institut, Villigen, 5232 Villigen PSI, Switzerland.ORCID 0000-0002-0489-609X
Gemma NewbyEuropean Synchrotron Radiation Facility, 38000 Grenoble, France.
Dmitry KhakhulinEuropean Synchrotron Radiation Facility, 38000 Grenoble, France.
Michael WulffEuropean Synchrotron Radiation Facility, 38000 Grenoble, France.
Janne A IhalainenUniversity of Jyväskylä, 40014 Jyväskylä, Finland.
Sebastian WestenhoffUniversity of Gothenburg, 40530 Gothenburg, Sweden.
University of Gothenburg · SEEuropean Synchrotron Radiation Facility · FRTampere University · FIUniversity of Chicago · USUniversity of Jyväskylä · FIPaul Scherrer Institute · CH

Funding

BioCARS: A Synchrotron Structure Biology ResourceR24GM111072 · NIGMS · UNIVERSITY OF CHICAGO · PI MOFFAT, JOHN KEITH · 2013 to 2016
$2.3M
European Research CouncilNIGMS NIH HHS R24 GM111072
6 · The paper itself

Abstract

Phytochromes are light sensor proteins found in plants, bacteria, and fungi. They function by converting a photon absorption event into a conformational signal that propagates from the chromophore through the entire protein. However, the structure of the photoactivated state and the conformational changes that lead to it are not known. We report time-resolved x-ray scattering of the full-length phytochrome from Deinococcus radiodurans on micro- and millisecond time scales. We identify a twist of the histidine kinase output domains with respect to the chromophore-binding domains as the dominant change between the photoactivated and resting states. The time-resolved data further show that the structural changes up to the microsecond time scales are small and localized in the chromophore-binding domains. The global structural change occurs within a few milliseconds, coinciding with the formation of the spectroscopic meta-Rc state. Our findings establish key elements of the signaling mechanism of full-length bacterial phytochromes.

Indexed as

Models, MolecularProtein ConformationBacterial ProteinsKineticsPhotoreceptors, MicrobialPhytochromeStructure-Activity RelationshipBacterial ProteinsPhotoreceptors, MicrobialPhytochrome

Identifiers

PMID27536728
PMCPMC4982709
OpenAlexW2517235227

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.