ArticleFrontiers in plant science2016
Identification of Sesame Genomic Variations from Genome Comparison of Landrace and Variety.
Article in Frontiers in plant science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Charcoal rot in sesame: infection biology, host resistance mechanism, and genomic-enabled strategies for durable resistance breeding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Genome-wide association scan and candidate gene analysis for seed coat color in sesame (Frontiers in plant science · 2025Article
- Genome Size Variation inGenes · 2024Article
- Transcriptional convergence after repeated duplication of an amino acid transporter gene leads to the independent emergence of the black husk/pericarp trait in barley and rice.Plant biotechnology journal · 2024Article
- Genetic engineering and genome editing technologies as catalyst for Africa's food security: the case of plant biotechnology in Nigeria.Frontiers in genome editing · 2024Review
- Omics technologies towards sesame improvement: a review.Molecular biology reports · 2023Review
- Generation of Sesame Mutant Population by Mutagenesis and Identification of High Oleate Mutants by GC Analysis.Plants (Basel, Switzerland) · 2023Article
- Current Progress, Applications and Challenges of Multi-Omics Approaches in Sesame Genetic Improvement.International journal of molecular sciences · 2023Review
- Genetic mapping of QTLs controlling brown seed coat traits by genome resequencing in sesame (Frontiers in plant science · 2023Article
- Improved assembly and annotation of the sesame genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022Article
- Fine-mapping and identification of a candidate gene controlling seed coat color in melon (Cucumis melo L. var. chinensis Pangalo).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Discovering favorable genes, QTLs, and genotypes as a genetic resource for sesame (Frontiers in genetics · 2022Review
- Genome-wide association analysis uncovers the genetic architecture of tradeoff between flowering date and yield components in sesame.BMC plant biology · 2021Article
- Genome-wide association study and its applications in the non-model crop Sesamum indicum.BMC plant biology · 2021Review
- Characterization of the Genetic Diversity Present in a Diverse Sesame Landrace Collection Based on Phenotypic Traits and EST-SSR Markers Coupled With an HRM Analysis.Plants (Basel, Switzerland) · 2021Article
- Lignans of Sesame (Molecules (Basel, Switzerland) · 2021Review
- Article
- Integration of miRNAs, Degradome, and Transcriptome Omics Uncovers a Complex Regulatory Network and Provides Insights Into Lipid and Fatty Acid Synthesis During Sesame Seed Development.Frontiers in plant science · 2021Article
- Article
- Genome-Wide Discovery of InDel Markers in Sesame (Plants (Basel, Switzerland) · 2020Article
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sesame (Sesamum indicum L.) is one of the main oilseed crops, providing vegetable oil and protein to human. Landrace is the gene source of variety, carrying many desire alleles for genetic improvement. Despite the importance of sesame landrace, genome of sesame landrace remains unexplored and genomic variations between landrace and variety still is not clear. To identify the genomic variations between sesame landrace and variety, two representative sesame landrace accessions, "Baizhima" and "Mishuozhima," were selected and re-sequenced. The genome sequencing and de novo assembling of the two sesame landraces resulted in draft genomes of 267 Mb and 254 Mb, respectively, with the contig N50 more than 47 kb. Totally, 1,332,025 SNPs and 506,245 InDels were identified from the genome of "Baizhima" and "Mishuozhima" by comparison of the genome of a variety "Zhongzhi13." Among the genomic variations, 70,018 SNPs and 8311 InDels were located in the coding regions of genes. Genomic variations may contribute to variation of sesame agronomic traits such as flowering time, plant height, and oil content. The identified genomic variations were successfully used in the QTL mapping and the black pigment synthesis gene, PPO, was found to be the candidate gene of sesame seed coat color. The comprehensively compared genomes of sesame landrace and modern variety produced massive useful genomic information, constituting a powerful tool to support genetic research, and molecular breeding of sesame.
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