Evidence map›Paper›PMID 27536297›Full record

ArticleFrontiers in microbiology2016

Bacterial Dispersal Promotes Biodegradation in Heterogeneous Systems Exposed to Osmotic Stress.

Anja Worrich, Sara König, Thomas Banitz, Florian Centler, Karin Frank, Martin Thullner, Hauke Harms, Anja Miltner, Lukas Y Wick, Matthias Kästner

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Anja WorrichUFZ - Helmholtz Centre for Environmental Research, Department of Environmental MicrobiologyLeipzig, Germany; UFZ - Helmholtz Centre for Environmental Research, Department of Environmental BiotechnologyLeipzig, Germany.
Sara KönigUFZ - Helmholtz Centre for Environmental Research, Department of Environmental MicrobiologyLeipzig, Germany; UFZ - Helmholtz Centre for Environmental Research, Department of Ecological ModellingLeipzig, Germany.
Thomas BanitzUFZ - Helmholtz Centre for Environmental Research, Department of Ecological Modelling Leipzig, Germany.
Florian CentlerUFZ - Helmholtz Centre for Environmental Research, Department of Environmental Microbiology Leipzig, Germany.
Karin FrankUFZ - Helmholtz Centre for Environmental Research, Department of Ecological ModellingLeipzig, Germany; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-LeipzigLeipzig, Germany; Institute for Environmental Systems Research, University of OsnabrückOsnabrück, Germany.
Martin ThullnerUFZ - Helmholtz Centre for Environmental Research, Department of Environmental Microbiology Leipzig, Germany.
Hauke HarmsUFZ - Helmholtz Centre for Environmental Research, Department of Environmental MicrobiologyLeipzig, Germany; German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-LeipzigLeipzig, Germany.
Anja MiltnerUFZ - Helmholtz Centre for Environmental Research, Department of Environmental Biotechnology Leipzig, Germany.
Lukas Y WickUFZ - Helmholtz Centre for Environmental Research, Department of Environmental Microbiology Leipzig, Germany.
Matthias KästnerUFZ - Helmholtz Centre for Environmental Research, Department of Environmental Biotechnology Leipzig, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Contaminant biodegradation in soils is hampered by the heterogeneous distribution of degrading communities colonizing isolated microenvironments as a result of the soil architecture. Over the last years, soil salinization was recognized as an additional problem especially in arid and semiarid ecosystems as it drastically reduces the activity and motility of bacteria. Here, we studied the importance of different spatial processes for benzoate biodegradation at an environmentally relevant range of osmotic potentials (ΔΨo) using model ecosystems exhibiting a heterogeneous distribution of the soil-borne bacterium Pseudomonas putida KT2440. Three systematically manipulated scenarios allowed us to cover the effects of (i) substrate diffusion, (ii) substrate diffusion and autonomous bacterial dispersal, and (iii) substrate diffusion and autonomous as well as mediated bacterial dispersal along glass fiber networks mimicking fungal hyphae. To quantify the relative importance of the different spatial processes, we compared these heterogeneous scenarios to a reference value obtained for each ΔΨo by means of a quasi-optimal scenario in which degraders were ab initio homogeneously distributed. Substrate diffusion as the sole spatial process was insufficient to counteract the disadvantage due to spatial degrader heterogeneity at ΔΨo ranging from 0 to -1 MPa. In this scenario, only 13.8-21.3% of the quasi-optimal biodegradation performance could be achieved. In the same range of ΔΨo values, substrate diffusion in combination with bacterial dispersal allowed between 68.6 and 36.2% of the performance showing a clear downwards trend with decreasing ΔΨo. At -1.5 MPa, however, this scenario performed worse than the diffusion scenario, possibly as a result of energetic disadvantages associated with flagellum synthesis and emerging requirements to exceed a critical population density to resist osmotic stress. Network-mediated bacterial dispersal kept biodegradation almost consistently high with an average of 70.7 ± 7.8%, regardless of the strength of the osmotic stress. We propose that especially fungal network-mediated bacterial dispersal is a key process to achieve high functionality of heterogeneous microbial ecosystems also at reduced osmotic potentials. Thus, mechanical stress by, for example, soil homogenization should be kept low in order to preserve fungal network integrity.

Indexed as

biodegradationcontaminantsdiffusiondispersal networksheterogeneityosmotic stressPseudomonas putidaspatial processes

Identifiers

PMID27536297
PMCPMC4971104

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.