Evidence map›Paper›PMID 27536003›Full record

ArticleNucleic acids research2016

Incision of damaged DNA in the presence of an impaired Smc5/6 complex imperils genome stability.

Jie Peng, Wenyi Feng

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jie PengDepartment of Biochemistry and Molecular Biology, State University of New York Upstate Medical University, Syracuse, NY 13210, USA.
Wenyi FengDepartment of Biochemistry and Molecular Biology, State University of New York Upstate Medical University, Syracuse, NY 13210, USA fengw@upstate.edu.ORCID http://orcid.org/0000-0002-6123-7998
SUNY Upstate Medical University · US

Funding

Single Stranded DNA: The Genome's Achilles HeelR00GM081378 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI FENG, WENYI · 2011 to 2013
$658k
NIGMS NIH HHS R00 GM081378
6 · The paper itself

Abstract

The Smc5/6 complex is implicated in homologous recombination-mediated DNA repair during DNA damage or replication stress. Here, we analysed genome-wide replication dynamics in a hypomorphic budding yeast mutant, smc6-P4 The overall replication dynamics in the smc6 mutant is similar to that in the wild-type cells. However, we captured a difference in the replication profile of an early S phase sample in the mutant, prompting the hypothesis that the mutant incorporates ribonucleotides and/or accumulates single-stranded DNA gaps during replication. We tested if inhibiting the ribonucleotide excision repair pathway would exacerbate the smc6 mutant in response to DNA replication stress. Contrary to our expectation, impairment of ribonucleotide excision repair, as well as virtually all other DNA repair pathways, alleviated smc6 mutant's hypersensitivity to induced replication stress. We propose that nucleotide incision in the absence of a functional Smc5/6 complex has more disastrous outcomes than the damage per se Our study provides novel perspectives for the role of the Smc5/6 complex during DNA replication.

Indexed as

DNA DamageGenomic InstabilityAdenosine MonophosphateCell CycleCell Cycle ProteinsDNA Mismatch RepairDNA RepairDNA ReplicationDNA, Single-StrandedFungal ProteinsGenome, FungalHydroxyureaMultiprotein ComplexesMutationProtein BindingRibonuclease HAdenosine MonophosphateCell Cycle ProteinsDNA, Single-StrandedFungal ProteinsHydroxyureaMultiprotein ComplexesRibonuclease Hribonuclease HII

Identifiers

PMID27536003
PMCPMC5137426
OpenAlexW2513436668

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.