Evidence map›Paper›PMID 27535992›Full record

ArticleJournal of experimental botany2016

Proteomic analysis reveals dynamic regulation of fruit development and sugar and acid accumulation in apple.

Mingjun Li, Dongxia Li, Fengjuan Feng, Sheng Zhang, Fengwang Ma, Lailiang Cheng

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
16.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 120 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Mingjun LiState Key of Crop Stress Biology in Arid Areas/College of Horticulture, Northwest A&F University, Yangling, Shaanxi, China Section of Horticulture, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA limingjun@nwsuaf.edu.cn LC89@cornell.edu.ORCID 0000-0001-5508-895X
Dongxia LiState Key of Crop Stress Biology in Arid Areas/College of Horticulture, Northwest A&F University, Yangling, Shaanxi, China.
Fengjuan FengState Key of Crop Stress Biology in Arid Areas/College of Horticulture, Northwest A&F University, Yangling, Shaanxi, China Section of Horticulture, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA.
Sheng ZhangInstitute of Biotechnology, Cornell University, Ithaca, NY 14853, USA.
Fengwang MaState Key of Crop Stress Biology in Arid Areas/College of Horticulture, Northwest A&F University, Yangling, Shaanxi, China.
Lailiang ChengSection of Horticulture, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA limingjun@nwsuaf.edu.cn LC89@cornell.edu.ORCID 0000-0003-1759-9761
Cornell University · USNorthwest A&F University · CN

Funding

Acquisition of a Hybrid Quadrupole, Ion Mobility Separation, Orthogonal AcceleratS10RR025449 · NCRR · CORNELL UNIVERSITY · PI ZHANG, SHENG · 2009 to 2009
$500k
NCRR NIH HHS S10 RR025449
6 · The paper itself

Abstract

Understanding the fruit developmental process is critical for fruit quality improvement. Here, we report a comprehensive proteomic analysis of apple fruit development over five growth stages, from young fruit to maturity, coupled with metabolomic profiling. A tandem mass tag (TMT)-based comparative proteomics approach led to the identification and quantification of 7098 and 6247 proteins, respectively. This large-scale proteomic dataset presents a global view of the critical pathways involved in fruit development and metabolism. When linked with metabolomics data, these results provide new insights into the modulation of fruit development, the metabolism and storage of sugars and organic acids (mainly malate), and events within the energy-related pathways for respiration and glycolysis. We suggest that the key steps identified here (e.g. those involving the FK2, TST, EDR6, SPS, mtME and mtMDH switches), can be further targeted to confirm their roles in accumulation and balance of fructose, sucrose and malate. Moreover, our findings imply that the primary reason for decreases in amino acid concentrations during fruit development is related to a reduction in substrate flux via glycolysis, which is mainly regulated by fructose-bisphosphate aldolase and bisphosphoglycerate mutase.

Indexed as

Carbohydrate MetabolismAmino AcidsFruitMalatesMalusMetabolic Networks and PathwaysMetabolomicsPlant ProteinsProteomicsAmino AcidsMalatesmalic acidPlant ProteinsAmino acidapplefruit developmentfunctional annotationorganic acidsugartandem mass tag.

Identifiers

PMID27535992
PMCPMC7299428
OpenAlexW2515379440

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.