Evidence map›Paper›PMID 27535935›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Glimpse of natural selection of long-lived T-cell clones in healthy life.

Baojun Zhang, Qingzhu Jia, Cheryl Bock, Gang Chen, Haili Yu, Qingshan Ni, Ying Wan, Qijing Li, Yuan Zhuang

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Rag1-based time-stamp tracing of T-cell developmental origins.Journal of immunology (Baltimore, Md. : 1950) · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. A guide to thymic selection of T cells.Nature reviews. Immunology · 2024
    Review
  6. Review
  7. Article
  8. Early age-related atrophy of cutaneous lymph nodes precipitates an early functional decline in skin immunity in mice with aging.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Article
  10. Article
  11. Review
  12. Physiology and pathology of T-cell aging.International immunology · 2020
    Review
  13. Article
  14. Article
  15. Fate mapping reveals the age structure of the peripheral T cell compartment.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  16. Role of Cell-Intrinsic and Environmental Age-Related Changes in Altered Maintenance of Murine T Cells in Lymphoid Organs.The journals of gerontology. Series A, Biological sciences and medical sciences · 2018
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Baojun ZhangDepartment of Immunology, Duke University Medical Center, Durham, NC 27710;
Qingzhu JiaBiomedical Analysis Center, The Third Military Medical University, Chongqing 400038, China.
Cheryl BockDepartment of Immunology, Duke University Medical Center, Durham, NC 27710;
Gang ChenBiomedical Analysis Center, The Third Military Medical University, Chongqing 400038, China.
Haili YuBiomedical Analysis Center, The Third Military Medical University, Chongqing 400038, China.
Qingshan NiBiomedical Analysis Center, The Third Military Medical University, Chongqing 400038, China.
Ying WanBiomedical Analysis Center, The Third Military Medical University, Chongqing 400038, China wanying.cn@gmail.com qi-jing.li@duke.edu yzhuang@duke.edu.
Qijing LiDepartment of Immunology, Duke University Medical Center, Durham, NC 27710; wanying.cn@gmail.com qi-jing.li@duke.edu yzhuang@duke.edu.
Yuan ZhuangDepartment of Immunology, Duke University Medical Center, Durham, NC 27710; wanying.cn@gmail.com qi-jing.li@duke.edu yzhuang@duke.edu.
Army Medical University · CNDuke Medical Center · USDuke University Hospital · US

Funding

The role of TCR, ligand, and signal strength in human γδ T cell developmentP01AI102853 · NIAID · RESEARCH INST OF FOX CHASE CAN CTR · PI Maria Ciofani · 2014 to 2026
$26.3M
HEB MEDIATED PATHWAYS AND FUNCTION IN T CELL DEVELOPMENTR01GM059638 · NIGMS · DUKE UNIVERSITY · PI CHAN, FRANCIS KAMING · 1999 to 2021
$6.9M
A new approach to homeostatic maintenance of dendritic epidermal T cellsR21AG045440 · NIA · DUKE UNIVERSITY · PI ZHUANG, YUAN · 2014 to 2015
$428k
A New Genetic Tool for Lineage Tracing of Mitotic Cells in MiceR21RR032742 · NCRR · DUKE UNIVERSITY · PI ZHUANG, YUAN · 2011 to 2011
$236k
A New Genetic Tool for Lineage Tracing of Mitotic Cells in MiceR21OD011200 · OD · DUKE UNIVERSITY · PI ZHUANG, YUAN · 2012 to 2012
$196k
NCRR NIH HHS R21 RR032742NIAID NIH HHS P01 AI102853NIA NIH HHS R21 AG045440NIGMS NIH HHS R01 GM059638NIH HHS R21 OD011200
6 · The paper itself

Abstract

Homeostatic maintenance of T cells with broad clonal diversity is influenced by both continuing output of young T cells from the thymus and ongoing turnover of preexisting clones in the periphery. In the absence of infection, self and commensal antigens are thought to play important roles in selection and homeostatic maintenance of the T-cell pool. Most naïve T cells are short-lived due to lack of antigen encounter, whereas antigen-experienced T cells may survive and persist as long-lived clones. Thus far, little is known about the homeostasis, antigenic specificity, and clonal diversity of long-lived T-cell clones in peripheral lymphoid organs under healthy living conditions. To identify long-lived T-cell clones in mice, we designed a lineage-tracing method to label a wave of T cells produced in the thymus of young mice. After aging the mice for 1.5 y, we found that lineage-tracked T cells consisted of primarily memory-like T cells and T regulatory cells. T-cell receptor repertoire analysis revealed that the lineage-tracked CD4 memory-like T cells and T regulatory cells exhibited age-dependent enrichment of shared clonotypes. Furthermore, these shared clonotypes were found across different mice maintained in the same housing condition. These findings suggest that nonrandom and shared antigens are involved in controlling selection, retention, and immune tolerance of long-lived T-cell clones under healthy living conditions.

Indexed as

AgingAnimalsCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesClone CellsCytokinesForkhead Transcription FactorsHomeostasisImmunologic MemoryMice, 129 StrainMice, TransgenicReceptors, Antigen, T-CellSelection, GeneticThymus GlandT-LymphocytesT-Lymphocytes, RegulatoryCytokinesForkhead Transcription FactorsFoxp3 protein, mouseReceptors, Antigen, T-Cellaginglineage trackingTCR repertoiretoleranceT regulatory cells

Identifiers

PMID27535935
PMCPMC5024599
OpenAlexW2511224444

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.