Evidence map›Paper›PMID 27535934›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2016

Superresolution intrinsic fluorescence imaging of chromatin utilizing native, unmodified nucleic acids for contrast.

Biqin Dong, Luay M Almassalha, Yolanda Stypula-Cyrus, Ben E Urban, John E Chandler, The-Quyen Nguyen, Cheng Sun, Hao F Zhang, Vadim Backman

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Ultra-weak photon emission from DNA.Scientific reports · 2024
    Article
  9. Article
  10. Article
  11. Dissection of DNA damage and repair pathways in live cells by femtosecond laser microirradiation and free-electron modeling.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Contribution of advanced fluorescence nano microscopy towards revealing mitotic chromosome structure.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Biqin DongBiomedical Engineering Department, Northwestern University, Evanston, IL 60208; Mechanical Engineering Department, Northwestern University, Evanston, IL 60208.
Luay M AlmassalhaBiomedical Engineering Department, Northwestern University, Evanston, IL 60208;
Yolanda Stypula-CyrusBiomedical Engineering Department, Northwestern University, Evanston, IL 60208;
Ben E UrbanBiomedical Engineering Department, Northwestern University, Evanston, IL 60208;
John E ChandlerBiomedical Engineering Department, Northwestern University, Evanston, IL 60208;
The-Quyen NguyenBiomedical Engineering Department, Northwestern University, Evanston, IL 60208;
Cheng SunMechanical Engineering Department, Northwestern University, Evanston, IL 60208.
Hao F ZhangBiomedical Engineering Department, Northwestern University, Evanston, IL 60208; hfzhang@northwestern.edu v-backman@northwestern.edu.
Vadim BackmanBiomedical Engineering Department, Northwestern University, Evanston, IL 60208; hfzhang@northwestern.edu v-backman@northwestern.edu.

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008152 · NIGMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ARDEHALI, HOSSEIN · 1987 to 2021
$24.0M
Spatio-Temporal Organization of Chromatin and Information Transfer in CancerU54CA193419 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI O'HALLORAN, THOMAS V · 2015 to 2020
$10.4M
Training Program In Lung SciencesT32HL076139 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI KAREN M RIDGE, Jacob I Sznajder · 2004 to 2026
$9.6M
Novel Antiangiogenic Peptides for Treatment of Exudative AMDR24EY022883 · NEI · UNIVERSITY OF WISCONSIN-MADISON · PI SHEIBANI, NADER · 2013 to 2017
$6.2M
Multimodal Retinal Functional Imaging for Diabetic RetinopathyR01EY019951 · NEI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FAWZI, AMANI A, JIAO, SHULIANG · 2011 to 2015
$3.0M
Nanoscale/Molecular analysis of Fecal Colonocytes for Colorectal Cancer ScreeningR01CA165309 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, ROY, HEMANT K. · 2012 to 2016
$2.8M
Functional Retinal Imaging to Monitor Pharmaco-Therapies in Diabetic RetinopathyDP3DK108248 · NIDDK · NORTHWESTERN UNIVERSITY AT CHICAGO · PI FAWZI, AMANI A, ZHANG, HAO F · 2015 to 2015
$1.9M
NCI NIH HHS P30 CA060553NCI NIH HHS R01 CA165309NCI NIH HHS U54 CA193419NEI NIH HHS R01 EY019951NEI NIH HHS R24 EY022883NHLBI NIH HHS T32 HL076139NIDDK NIH HHS DP3 DK108248NIGMS NIH HHS T32 GM008152
6 · The paper itself

Abstract

Visualizing the nanoscale intracellular structures formed by nucleic acids, such as chromatin, in nonperturbed, structurally and dynamically complex cellular systems, will help expand our understanding of biological processes and open the next frontier for biological discovery. Traditional superresolution techniques to visualize subdiffractional macromolecular structures formed by nucleic acids require exogenous labels that may perturb cell function and change the very molecular processes they intend to study, especially at the extremely high label densities required for superresolution. However, despite tremendous interest and demonstrated need, label-free optical superresolution imaging of nucleotide topology under native nonperturbing conditions has never been possible. Here we investigate a photoswitching process of native nucleotides and present the demonstration of subdiffraction-resolution imaging of cellular structures using intrinsic contrast from unmodified DNA based on the principle of single-molecule photon localization microscopy (PLM). Using DNA-PLM, we achieved nanoscopic imaging of interphase nuclei and mitotic chromosomes, allowing a quantitative analysis of the DNA occupancy level and a subdiffractional analysis of the chromosomal organization. This study may pave a new way for label-free superresolution nanoscopic imaging of macromolecular structures with nucleotide topologies and could contribute to the development of new DNA-based contrast agents for superresolution imaging.

Indexed as

Cell NucleusChromatinDNAHeLa CellsHumansInterphaseMicroscopy, FluorescenceMitosisNucleotidesOptical ImagingSingle Molecule ImagingChromatinDNANucleotideschromatin topologychromosomelabel-free imagingnucleic acidssuperresolution fluorescence microscopy

Identifiers

PMID27535934
PMCPMC5024634

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.