ArticleMolecular genetics and genomics : MGG2016
SNP-based discovery of salinity-tolerant QTLs in a bi-parental population of rice (Oryza sativa).
Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.
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Who cites it
19 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.
- Meta-analysis of identified genomic regions and candidate genes underlying salinity tolerance in rice (Oryza sativa L.).Scientific reports · 2024Pooled it
- QTL-Seq identified a genomic region on chromosome 1 for soil-salinity tolerance in FFrontiers in plant science · 2024Article
- NP and 9311 are excellent population parents for screening QTLs of potassium-efficient rice.PloS one · 2023Article
- Mapping QTLs for Reproductive Stage Salinity Tolerance in Rice Using a Cross between Hasawi and BRRI dhan28.International journal of molecular sciences · 2022Article
- Identification of thePlants (Basel, Switzerland) · 2022Article
- Meta-analysis of QTLs and candidate genes associated with seed germination in rice (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Quantitative trait locus mapping and candidate gene analysis for salt tolerance at bud stage in rice.Frontiers in plant science · 2022Article
- Physiological and molecular implications of multiple abiotic stresses on yield and quality of rice.Frontiers in plant science · 2022Review
- Salt tolerance in rice: seedling and reproductive stage QTL mapping come of age.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Review
- Genome-Wide Association Mapping of Salinity Tolerance at the Seedling Stage in a Panel of Vietnamese Landraces Reveals New Valuable QTLs for Salinity Stress Tolerance Breeding in Rice.Plants (Basel, Switzerland) · 2021Article
- Functions and structure of roots and their contributions to salinity tolerance in plants.Breeding science · 2021Article
- Advances and Challenges in the Breeding of Salt-Tolerant Rice.International journal of molecular sciences · 2020Review
- QTL mapping for grain yield-related traits in bread wheat via SNP-based selective genotyping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
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- QTLian breeding for climate resilience in cereals: progress and prospects.Functional & integrative genomics · 2019Review
- Meta-Analysis of Quantitative Trait Loci Associated with Seedling-Stage Salt Tolerance in Rice (Plants (Basel, Switzerland) · 2019Article
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- Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications.Rice (New York, N.Y.) · 2017Article
Corrections and comments
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Authors and funding
4 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Breeding for salt tolerance is the most promising approach to enhance the productivity of saline prone areas. However, polygenic inheritance of salt tolerance in rice acts as a bottleneck in conventional breeding for salt tolerance. Hence, we set our goals to construct a single nucleotide polymorphism (SNP)-based molecular map employing high-throughput SNP marker technology and to investigate salinity tolerant QTLs with closest flanking markers using an elite rice background. Seedling stage salinity responses were assessed in a population of 281 recombinant inbred lines (RILs) derived from the cross between At354 (salt tolerant) and Bg352 (salt susceptible), by 11 morpho-physiological indices under a hydroponic system. Selected extreme 94 RILs were genotyped using Illumina Infinium rice 6K SNP array and densely saturated molecular map spanning 1460.81 cM of the rice genome with an average interval of 1.29 cM between marker loci was constructed using 1135 polymorphic SNP markers. The results revealed 83 significant QTLs for 11 salt responsive traits explaining 12.5-46.7 % of phenotypic variation in respective traits. Of them, 72 QTLs responsible for 10 traits were co-localized together forming 14 QTL hotspots at 14 different genomic regions. The all QTL hotspots were flanked less than 1 Mb intervals and therefore the SNP loci associated with these QTL hotspots would be important in candidate gene discovery for salt tolerance.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.