Evidence map›Paper›PMID 27535220›Full record

ArticleThe Journal of biological chemistry2016

Biochemical Characterization of Bifunctional 3-Deoxy-β-d-manno-oct-2-ulosonic Acid (β-Kdo) Transferase KpsC from Escherichia coli Involved in Capsule Biosynthesis.

Olga G Ovchinnikova, Liam Doyle, Bo-Shun Huang, Matthew S Kimber, Todd L Lowary, Chris Whitfield

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The Journal of biological chemistry · 2019
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Olga G OvchinnikovaFrom the Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1 and.
Liam DoyleFrom the Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1 and.
Bo-Shun Huangthe Department of Chemistry and Alberta Glycomics Centre, University of Alberta, Edmonton, Alberta T6G 2G2, Canada.
Matthew S KimberFrom the Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1 and.
Todd L Lowarythe Department of Chemistry and Alberta Glycomics Centre, University of Alberta, Edmonton, Alberta T6G 2G2, Canada.
Chris WhitfieldFrom the Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario N1G 2W1 and cwhitfie@uoguelph.ca.ORCID http://orcid.org/0000-0002-5267-7027
University of Guelph · CAUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

3-Deoxy-d-manno-oct-2-ulosonic acid (Kdo) is an essential component of bacterial lipopolysaccharides, where it provides the linkage between lipid and carbohydrate moieties. In all known LPS structures, Kdo residues possess α-anomeric configurations, and the corresponding inverting α-Kdo transferases are well characterized. Recently, it has been shown that a large group of capsular polysaccharides from Gram-negative bacteria, produced by ATP-binding cassette transporter-dependent pathways, are also attached to a lipid anchor through a conserved Kdo oligosaccharide. In the study reported here, the structure of this Kdo linker was determined by NMR spectroscopy, revealing alternating β-(2→4)- and β-(2→7)-linked Kdo residues. KpsC contains two retaining β-Kdo glycosyltransferase domains belonging to family GT99 that are responsible for polymerizing the β-Kdo linker on its glycolipid acceptor. Full-length Escherichia coli KpsC was expressed and purified, together with the isolated N-terminal domain and a mutant protein (KpsC D160A) containing a catalytically inactivated N-terminal domain. The Kdo transferase activities of these proteins were determined in vitro using synthetic acceptors, and the reaction products were characterized using TLC, mass spectrometry, and NMR spectroscopy. The N- and C-terminal domains were found to catalyze formation of β-(2→4) and β-(2→7) linkages, respectively. Based on phylogenetic analyses, we propose the linkage specificities of the glycosyltransferase domains are conserved in KpsC homologs from other bacterial species.

Indexed as

Bacterial CapsulesEscherichia coliPhylogenySugar AcidsTransferasesCatalysisLipopolysaccharidesNuclear Magnetic Resonance, BiomolecularOligosaccharidesProtein DomainsLipopolysaccharidesOligosaccharidesSugar AcidsTransferasescapsular polysaccharidecell surfaceEscherichia coli (E. coli)glycoconjugateglycolipid structureglycosyltransferasegram-negative bacteriaKdooligosaccharide

Identifiers

PMID27535220
PMCPMC5076823
OpenAlexW2510958639

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.