Evidence map›Paper›PMID 27535055›Full record

ArticleJournal of virology2016

Functional and Structural Characterization of P[19] Rotavirus VP8* Interaction with Histo-blood Group Antigens.

Xiaoman Sun, Dandi Li, Ruchao Peng, Nijun Guo, Miao Jin, Yongkang Zhou, Guangcheng Xie, Lili Pang, Qing Zhang, Jianxun Qi and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Structural Basis of Glycan Recognition of Rotavirus.Frontiers in molecular biosciences · 2021
    Review
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  7. Review
  8. Article
  9. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Xiaoman SunKey Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Dandi LiKey Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Ruchao PengInstitute of Microbiology, Chinese Academy of Sciences, Beijing, China.
Nijun GuoKey Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Miao JinKey Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Yongkang ZhouKey Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Guangcheng XieKey Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Lili PangKey Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Qing ZhangKey Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China.
Jianxun QiInstitute of Microbiology, Chinese Academy of Sciences, Beijing, China.
Zhao-Jun DuanKey Laboratory of Medical Virology and Viral Diseases, Ministry of Health of the People's Republic of China, Beijing, China National Institute for Viral Disease Control and Prevention, China CDC, Beijing, China zhaojund@126.com.
National Health and Family Planning Commission · CNNational Institute for Viral Disease Control and Prevention · CNChinese Academy of Sciences · CNChinese Center For Disease Control and Prevention · CNInstitute of Microbiology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rotaviruses (RVs) of species A (RVA) are a major causative agent of acute gastroenteritis. Recently, histo-blood group antigens (HBGAs) have been reported to interact with human RVA VP8* proteins. Human P[19] is a rare P genotype of porcine origin that infects humans sporadically. The functional and structural characteristics of P[19] VP8* interaction with HBGAs are unknown. In this study, we expressed and purified the VP8* proteins of human and porcine P[19] RVs. In oligosaccharide and saliva binding assays, P[19] VP8* proteins showed obvious binding to A-, B-, and O-type saliva samples irrespective of the secretor status, implying broad binding patterns. However, they did not display specific binding to any of the oligosaccharides tested. In addition, we solved the structure of human P[19] VP8* at 2.4 Å, which revealed a typical galectin-like fold. The structural alignment demonstrated that P[19] VP8* was most similar to that of P[8], which was consistent with the phylogenetic analysis. Structure superimposition revealed the basis for the lack of binding to the oligosaccharides. Our study indicates that P[19] RVs may bind to other oligosaccharides or ligands and may have the potential to spread widely among humans. Thus, it is necessary to place the prevalence and evolution of P[19] RVs under surveillance. IMPORTANCE: Human P[19] is a rare P genotype of porcine origin. Based on phylogenetic analysis of VP8* sequences, P[19] was classified in the P[II] genogroup, together with P[4], P[6], and P[8], which have been reported to interact with HBGAs in a genotype-dependent manner. In this study, we explored the functional and structural characteristics of P[19] VP8* interaction with HBGAs. P[19] VP8* showed binding to A-, B-, and O-type saliva samples, as well as saliva of nonsecretors. This implies that P[19] has the potential to spread among humans with a broad binding range. Careful attention should be paid to the evolution and prevalence of P[19] RVs. Furthermore, we solved the structure of P[19] VP8*. Structure superimposition indicated that P[19] may bind to other oligosaccharides or ligands using potential binding sites, suggesting that further investigation of the specific cell attachment factors is warranted.

Indexed as

Amino Acid SequenceAnimalsBinding SitesBlood Group AntigensCapsid ProteinsGastroenteritisGenotypeHumansOligosaccharidesPhylogenyRNA-Binding ProteinsRotavirusRotavirus InfectionsSequence AlignmentSwineViral Nonstructural ProteinsBlood Group AntigensCapsid ProteinsNS35 protein, rotavirusOligosaccharidesRNA-Binding ProteinsViral Nonstructural Proteins

Identifiers

PMID27535055
PMCPMC5068527
OpenAlexW2514031915

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.