Evidence map›Paper›PMID 27534685›Full record

ArticleThe Journal of infectious diseases2016

Adaptation of Mycobacterium tuberculosis to Impaired Host Immunity in HIV-Infected Patients.

Nicholas D Walter, Bouke C de Jong, Benjamin J Garcia, Gregory M Dolganov, William Worodria, Patrick Byanyima, Emmanuel Musisi, Laurence Huang, Edward D Chan, Tran T Van and 12 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Adaptive immunity shapes baseline physiology ofbioRxiv : the preprint server for biology · 2026
    Article
  2. TheFrontiers in immunology · 2021
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. TheFrontiers in immunology · 2017
    Review
  11. Tuberculosis Associated with HIV Infection.Microbiology spectrum · 2017
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 11 institutions in 4 countries.

Nicholas D WalterPulmonary Section, Denver Veterans Affairs Medical Center Integrated Center for Genes, Environment, and Health Division of Pulmonary Sciences and Critical Care Medicine.
Bouke C de JongNew York University, New York Institute of Tropical Medicine, Antwerp, Belgium Medical Research Council Laboratories, Serrekunda, Gambia.
Benjamin J GarciaIntegrated Center for Genes, Environment, and Health Computational Bioscience Program.
Gregory M DolganovDepartment of Microbiology and Immunology.
William WorodriaMakerere University-UCSF Research Collaboration, Kampala, Uganda.
Patrick ByanyimaMakerere University-UCSF Research Collaboration, Kampala, Uganda.
Emmanuel MusisiMakerere University-UCSF Research Collaboration, Kampala, Uganda.
Laurence HuangDivision of Pulmonary and Critical Care Medicine HIV/AIDS Division, University of California-San Francisco (UCSF).
Edward D ChanPulmonary Section, Denver Veterans Affairs Medical Center Department of Academic Affairs and Medicine, National Jewish Health, Denver Division of Pulmonary Sciences and Critical Care Medicine.
Tran T VanDepartment of Microbiology and Immunology.
Martin AntonioMedical Research Council Laboratories, Serrekunda, Gambia.
Abigail AyorindeMedical Research Council Laboratories, Serrekunda, Gambia.
Midori Kato-MaedaDivision of Pulmonary and Critical Care Medicine.
Payam NahidDivision of Pulmonary and Critical Care Medicine.
Ann M LeungDepartment of Radiology, Stanford University Medical Center.
Andrew YenDepartment of Radiology, University of California-San Diego.
Tasha E FingerlinIntegrated Center for Genes, Environment, and Health.
Katerina KechrisDepartment of Biostatistics and Informatics, Colorado School of Public Health, Aurora.
Michael StrongIntegrated Center for Genes, Environment, and Health Computational Bioscience Program.
Martin I VoskuilDepartment of Immunology and Microbiology, University of Colorado-Denver Anschutz Medical Campus.
J Lucian DavisDepartment of Epidemiology of Microbial Diseases Department of Pulmonary, Critical Care, and Sleep Medicine, Yale School of Medicine, New Haven, Connecticut.
Gary K SchoolnikDepartment of Microbiology and Immunology.
Makerere University · UGPulmonary and Critical Care Associates · USMRC Unit the Gambia · GMColorado School of Public Health · USInstituut voor Tropische Geneeskunde · BEStanford Medicine · USUniversity of California, San Diego · USUniversity of California, San Francisco · USUniversity of Colorado Anschutz Medical Campus · USVeterans Health Administration · USYale University · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR025780 · NCRR · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2008 to 2011
$61.3M
Computational Bioscience Program Training GrantT15LM009451 · NLM · UNIVERSITY OF COLORADO DENVER · PI Katherina Kechris-Mays, Arjun Krishnan · 2007 to 2026
$11.7M
Inflammation, Aging, Microbes, Obstructive Lung Disease and Diffusion Abnormalities (I AM OLD-DA) Study - Diversity SupplementR01HL128156 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, LAURENCE, HUNT, PETER W · 2015 to 2024
$7.1M
TB Surrogate Markers for Assessing Reponse to Treatment (TB SMART Study)R01AI104589 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NAHID, PAYAM, SIGAL, GEORGE B · 2013 to 2017
$6.2M
International HIV-associated Opportunistic Pneumonias (IHOP) StudyR01HL090335 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, LAURENCE · 2007 to 2011
$4.0M
The Mycobacterium Tuberculosis Dormancy ProgramR01AI061505 · NIAID · UNIVERSITY OF COLORADO DENVER · PI VOSKUIL, MARTIN INUA · 2005 to 2015
$3.6M
Patient-Oriented Research and Mentoring in PneumocystisK24HL087713 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, LAURENCE · 2006 to 2018
$1.8M
Oral Wash for Nucleic Acid Diagnosis and Prognosis of TB in HIV-Infected UgandansK23AI080147 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DAVIS, JOHN LUCIAN · 2008 to 2012
$711k
A Novel Proteomic Approach to TB Biomarker Discovery using Human ExosomesR21AI101714 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DAVIS, JOHN LUCIAN · 2012 to 2013
$429k
Blood Expression Profiles as a Biomarker for Responses to Tuberculosis TreatmentIK2CX000914 · VA · VA EASTERN COLORADO HEALTH CARE SYSTEM · PI WALTER, NICHOLAS D · 2014 to 2018
–
CSRD VA IK2 CX000914European Research Council 311725Medical Research Council MC_U190074190Medical Research Council MC_U190081991Medical Research Council MC_UP_A900_1122NCRR NIH HHS UL1 RR025780NHLBI NIH HHS K24 HL087713NHLBI NIH HHS R01 HL090335NIAID NIH HHS K23 AI080147NIAID NIH HHS R01 AI061505NIAID NIH HHS R01 AI104589NIAID NIH HHS R21 AI101714NLM NIH HHS T15 LM009451
6 · The paper itself

Abstract

backgroundIt is unknown whether immunosuppression influences the physiologic state of Mycobacterium tuberculosis in vivo. We evaluated the impact of host immunity by comparing M. tuberculosis and human gene transcription in sputum between human immunodeficiency virus (HIV)-infected and uninfected patients with tuberculosis.

methodsWe collected sputum specimens before treatment from Gambians and Ugandans with pulmonary tuberculosis, revealed by positive results of acid-fast bacillus smears. We quantified expression of 2179 M. tuberculosis genes and 234 human immune genes via quantitative reverse transcription-polymerase chain reaction. We summarized genes from key functional categories with significantly increased or decreased expression.

resultsA total of 24 of 65 patients with tuberculosis were HIV infected. M. tuberculosis DosR regulon genes were less highly expressed among HIV-infected patients with tuberculosis than among HIV-uninfected patients with tuberculosis (Gambia, P < .0001; Uganda, P = .037). In profiling of human genes from the same sputa, HIV-infected patients had 3.4-fold lower expression of IFNG (P = .005), 4.9-fold higher expression of ARG1 (P = .0006), and 3.4-fold higher expression of IL10 (P = .0002) than in HIV-uninfected patients with tuberculosis.

conclusionsM. tuberculosis in HIV-infected patients had lower expression of the DosR regulon, a critical metabolic and immunomodulatory switch induced by NO, carbon monoxide, and hypoxia. Our human data suggest that decreased DosR expression may result from alternative pathway activation of macrophages, with consequent decreased NO expression and/or by poor granuloma formation with consequent decreased hypoxic stress.

Indexed as

Adaptation, PhysiologicalAdultBacterial ProteinsDNA-Binding ProteinsGambiaGranulomaHIV InfectionsHumansHypoxiaMacrophagesMycobacterium tuberculosisNitrogen OxidesProtein KinasesRegulonSputumTranscription, GeneticBacterial ProteinsDNA-Binding ProteinsDosR protein, Mycobacterium tuberculosisNitrogen OxidesProtein Kinasesacquired immunodeficiency syndrome/immunologyMycobacterium tuberculosis/geneticsMycobacterium tuberculosis/physiologypulmonary/epidemiologysputum/microbiologytuberculosis

Identifiers

PMID27534685
PMCPMC5034964
OpenAlexW2510019153

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.