Evidence map›Paper›PMID 27534569›Full record

ArticleG3 (Bethesda, Md.)2016

Characterization of the Far Transcription Factor Family in Aspergillus flavus.

Xingyu Luo, Katharyn J Affeldt, Nancy P Keller

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Regulation of nutrient utilization in filamentous fungi.Applied microbiology and biotechnology · 2023
    Review
  5. Article
  6. Article
  7. Utilization of ferulic acid inFrontiers in fungal biology · 2022
    Article
  8. Article
  9. Transcriptome Sequencing Revealed an Inhibitory Mechanism ofInternational journal of molecular sciences · 2020
    Article
  10. Article
  11. Article
  12. Food safety (Tokyo, Japan) · 2018
    Review
  13. RewiringProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  14. Article
  15. The Peroxygenase Activity of theFrontiers in microbiology · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Xingyu LuoDepartment of Plant Pathology, University of Wisconsin-Madison, Wisconsin 53706.
Katharyn J AffeldtDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Wisconsin 53706.
Nancy P KellerDepartment of Medical Microbiology and Immunology, University of Wisconsin-Madison, Wisconsin 53706 Department of Bacteriology, University of Wisconsin-Madison, Wisconsin 53706 npkeller@wisc.edu.ORCID 0000-0002-4386-9473
University of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Metabolism of fatty acids is a critical requirement for the pathogenesis of oil seed pathogens including the fungus Aspergillus flavus Previous studies have correlated decreased ability to grow on fatty acids with reduced virulence of this fungus on host seed. Two fatty acid metabolism regulatory transcription factors, FarA and FarB, have been described in other filamentous fungi. Unexpectedly, we find A. flavus possesses three Far homologs, FarA, FarB, and FarC, with FarA and FarC showing a greater protein similarity to each other than FarB. farA and farB are located in regions of colinearity in all Aspergillus spp. sequenced to date, whereas farC is limited to a subset of species where it is inserted in an otherwise colinear region in Aspergillus genomes. Deletion and overexpression (OE) of farA and farB, but not farC, yielded mutants with aberrant growth patterns on specific fatty acids as well as altered expression of genes involved in fatty acid metabolism. Marked differences included significant growth defects of both ∆farA and ∆farB on medium-chain fatty acids and decreased growth of OE::farA on unsaturated fatty acids. Loss of farA diminished expression of mitochondrial β-oxidation genes whereas OE::farA inhibited expression of genes involved in unsaturated fatty acid catabolism. FarA also positively regulated the desaturase genes required to generate polyunsaturated fatty acids. Aflatoxin production on toxin-inducing media was significantly decreased in the ∆farB mutant and increased in the OE::farB mutant, with gene expression data supporting a role for FarB in tying β-oxidation processes with aflatoxin accumulation.

Indexed as

Multigene FamilyAflatoxinsAspergillus flavusFatty AcidsFungal ProteinsGene DeletionGene ExpressionGene Expression ProfilingGene Expression Regulation, FungalLipid MetabolismMutationOxidation-ReductionPhylogenyPlant DiseasesSequence Analysis, DNATranscription FactorsAflatoxinsFatty AcidsFungal ProteinsTranscription Factorsaflatoxinfatty acid metabolismFlyBookgene familyvirulenceβ-oxidation

Identifiers

PMID27534569
PMCPMC5068947
OpenAlexW2511222426

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.