Evidence map›Paper›PMID 27532424›Full record

ArticlePloS one2016

Iron Content Affects Lipogenic Gene Expression in the Muscle of Nelore Beef Cattle.

Wellison Jarles da Silva Diniz, Luiz Lehmann Coutinho, Polyana Cristine Tizioto, Aline Silva Mello Cesar, Caio Fernando Gromboni, Ana Rita Araújo Nogueira, Priscila Silva Neubern de Oliveira, Marcela Maria de Souza, Luciana Correia de Almeida Regitano

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Wellison Jarles da Silva DinizDepartment of Genetic and Evolution, Federal University of São Carlos, São Carlos, Brazil.
Luiz Lehmann CoutinhoDepartment of Animal Science, University of São Paulo/ESALQ, Piracicaba, Brazil.
Polyana Cristine TiziotoEmbrapa Pecuária Sudeste, São Carlos, Brazil.
Aline Silva Mello CesarDepartment of Animal Science, University of São Paulo/ESALQ, Piracicaba, Brazil.
Caio Fernando GromboniBahia Federal Institute of Education, Science and Technology, Ilhéus, Brazil.
Ana Rita Araújo NogueiraEmbrapa Pecuária Sudeste, São Carlos, Brazil.
Priscila Silva Neubern de OliveiraEmbrapa Pecuária Sudeste, São Carlos, Brazil.
Marcela Maria de SouzaDepartment of Genetic and Evolution, Federal University of São Carlos, São Carlos, Brazil.
Luciana Correia de Almeida RegitanoEmbrapa Pecuária Sudeste, São Carlos, Brazil.ORCID http://orcid.org/0000-0001-9242-8351
Brazilian Agricultural Research Corporation · BRUniversidade de São Paulo · BRUniversidade Federal de São Carlos · BRInstituto Federal da Bahia · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Iron (Fe) is an essential mineral for metabolism and plays a central role in a range of biochemical processes. Therefore, this study aimed to identify differentially expressed (DE) genes and metabolic pathways in Longissimus dorsi (LD) muscle from cattle with divergent iron content, as well as to investigate the likely role of these DE genes in biological processes underlying beef quality parameters. Samples for RNA extraction for sequencing and iron, copper, manganese, and zinc determination were collected from LD muscles at slaughter. Eight Nelore steers, with extreme genomic estimated breeding values for iron content (Fe-GEBV), were selected from a reference population of 373 animals. From the 49 annotated DE genes (FDR<0.05) found between the two groups, 18 were up-regulated and 31 down-regulated for the animals in the low Fe-GEBV group. The functional enrichment analyses identified several biological processes, such as lipid transport and metabolism, and cell growth. Lipid metabolism was the main pathway observed in the analysis of metabolic and canonical signaling pathways for the genes identified as DE, including the genes FASN, FABP4, and THRSP, which are functional candidates for beef quality, suggesting reduced lipogenic activities with lower iron content. Our results indicate metabolic pathways that are partially influenced by iron, contributing to a better understanding of its participation in skeletal muscle physiology.

Indexed as

AnimalsCattleCopperFatty Acid-Binding ProteinsFatty Acid Synthase, Type IGene ExpressionGene Expression ProfilingIronLipid MetabolismLipogenesisManganeseMuscle, SkeletalRed MeatRNASignal TransductionTranscription FactorsCopperFatty Acid-Binding ProteinsFatty Acid Synthase, Type IIronManganeseRNATranscription FactorsZinc

Identifiers

PMID27532424
PMCPMC4988672
OpenAlexW2517940041

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.