Evidence map›Paper›PMID 27532052›Full record

ArticleScience advances2016

Genomic analysis reveals hidden biodiversity within colugos, the sister group to primates.

Victor C Mason, Gang Li, Patrick Minx, Jürgen Schmitz, Gennady Churakov, Liliya Doronina, Amanda D Melin, Nathaniel J Dominy, Norman T-L Lim, Mark S Springer and 4 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 86 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 4 countries.

Victor C MasonDepartment of Veterinary Integrative Biosciences, Interdisciplinary Program in Genetics, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0002-7962-4806
Gang LiDepartment of Veterinary Integrative Biosciences, Interdisciplinary Program in Genetics, Texas A&M University, College Station, TX 77843, USA.
Patrick MinxMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.ORCID 0000-0003-1179-2173
Jürgen SchmitzInstitute of Experimental Pathology (ZMBE), University of Münster, D-48149 Münster, Germany.ORCID 0000-0002-4686-861X
Gennady ChurakovInstitute of Experimental Pathology (ZMBE), University of Münster, D-48149 Münster, Germany.; Institute of Evolution and Biodiversity, University of Münster, D-48149 Münster, Germany.
Liliya DoroninaInstitute of Experimental Pathology (ZMBE), University of Münster, D-48149 Münster, Germany.
Amanda D MelinUniversity of Calgary, Calgary, Alberta T2N 1N4, Canada.ORCID 0000-0002-0612-2514
Nathaniel J DominyDepartments of Anthropology and Biological Sciences, Dartmouth College, Hanover, NH 03755, USA.ORCID 0000-0001-5916-418X
Norman T-L LimNatural Sciences and Science Education, National Institute of Education, Nanyang Technological University, Singapore 637616, Singapore.; Lee Kong Chian Natural History Museum, National University of Singapore, Singapore 117377 , Singapore.
Mark S SpringerDepartment of Biology, University of California, Riverside, Riverside, CA 92521, USA.
Richard K WilsonMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.ORCID 0000-0002-1992-1358
Wesley C WarrenMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.ORCID 0000-0003-2255-2730
Kristofer M HelgenDivision of Mammals, Smithsonian Institution, National Museum of Natural History, Washington, DC 20013, USA.
William J MurphyDepartment of Veterinary Integrative Biosciences, Interdisciplinary Program in Genetics, Texas A&M University, College Station, TX 77843, USA.
James S. McDonnell Foundation · USTexas A&M University · USUniversity of Münster · DEDartmouth College · USNational Museum of Natural History · USNational University of Singapore · SGUniversity of Calgary · CAUniversity of California, Riverside · US

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
NHGRI NIH HHS U54 HG003079
6 · The paper itself

Abstract

Colugos are among the most poorly studied mammals despite their centrality to resolving supraordinal primate relationships. Two described species of these gliding mammals are the sole living members of the order Dermoptera, distributed throughout Southeast Asia. We generated a draft genome sequence for a Sunda colugo and a Philippine colugo reference alignment, and used these to identify colugo-specific genetic changes that were enriched in sensory and musculoskeletal-related genes that likely underlie their nocturnal and gliding adaptations. Phylogenomic analysis and catalogs of rare genomic changes overwhelmingly support the contested hypothesis that colugos are the sister group to primates (Primatomorpha), to the exclusion of treeshrews. We captured ~140 kb of orthologous sequence data from colugo museum specimens sampled across their range and identified large genetic differences between many geographically isolated populations that may result in a >300% increase in the number of recognized colugo species. Our results identify conservation units to mitigate future losses of this enigmatic mammalian order.

Indexed as

GenomePhylogenyAnimalsBiodiversityChiropteraHigh-Throughput Nucleotide SequencingLemurMolecular Sequence AnnotationPrimatesbiogeographyColugogeneticsgenomic analysisphylogenomicspopulation dynamicsSoutheast Asia

Identifiers

PMID27532052
PMCPMC4980104
OpenAlexW2504969600

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.