Evidence map›Paper›PMID 27532044›Full record

ReviewScience advances2016

Cryo-EM studies of the structure and dynamics of vacuolar-type ATPases.

Mohammad T Mazhab-Jafari, John L Rubinstein

Abstract readReview
In one paragraph

Review in Science advances, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. CRISPR/Cas9-mediated gene editing ofFrontiers in plant science · 2023
    Article
  3. Article
  4. Structure of the dimeric ATP synthase from bovine mitochondria.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Article
  6. Cryo-EM studies of the rotary HBiophysics and physicobiology · 2019
    Review
  7. Article
  8. Review
  9. Cryo EM structure of intact rotary HNature communications · 2018
    Article
  10. The Peripheral Stalk of Rotary ATPases.Frontiers in physiology · 2018
    Review
  11. Article
  12. Subunit conformational variation within individual GroEL oligomers resolved by Cryo-EM.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Mohammad T Mazhab-JafariMolecular Structure and Function Program, The Hospital for Sick Children Research Institute, 686 Bay Street, Toronto, Ontario M5G 0A4, Canada.
John L RubinsteinMolecular Structure and Function Program, The Hospital for Sick Children Research Institute, 686 Bay Street, Toronto, Ontario M5G 0A4, Canada.; Department of Biochemistry, The University of Toronto, 1 King's College Circle, Toronto, Ontario M5S 1A8, Canada.; Department of Medical Biophysics, The University of Toronto, 101 College Street, Toronto, Ontario M5G 1L7, Canada.ORCID 0000-0003-0566-2209

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Electron cryomicroscopy (cryo-EM) has significantly advanced our understanding of molecular structure in biology. Recent innovations in both hardware and software have made cryo-EM a viable alternative for targets that are not amenable to x-ray crystallography or nuclear magnetic resonance (NMR) spectroscopy. Cryo-EM has even become the method of choice in some situations where x-ray crystallography and NMR spectroscopy are possible but where cryo-EM can determine structures at higher resolution or with less time or effort. Rotary adenosine triphosphatases (ATPases) are crucial to the maintenance of cellular homeostasis. These enzymes couple the synthesis or hydrolysis of adenosine triphosphate to the use or production of a transmembrane electrochemical ion gradient, respectively. However, the membrane-embedded nature and conformational heterogeneity of intact rotary ATPases have prevented their high-resolution structural analysis to date. Recent application of cryo-EM methods to the different types of rotary ATPase has led to sudden advances in understanding the structure and function of these enzymes, revealing significant conformational heterogeneity and characteristic transmembrane α helices that are highly tilted with respect to the membrane. In this Review, we will discuss what has been learned recently about rotary ATPase structure and function, with a particular focus on the vacuolar-type ATPases.

Indexed as

Cryoelectron MicroscopyCrystallography, X-RayMagnetic Resonance SpectroscopyProtein Structure, QuaternaryProtein Structure, TertiaryThermus thermophilusVacuolar Proton-Translocating ATPasesVacuolar Proton-Translocating ATPasescryoEMCryo-EMdynamicsRotary ATPasesstructureV-ATPase

Identifiers

PMID27532044
PMCPMC4985227

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.