Evidence map›Paper›PMID 27531880›Full record

ArticleOral oncology2016

'Cytology-on-a-chip' based sensors for monitoring of potentially malignant oral lesions.

Timothy J Abram, Pierre N Floriano, Nicolaos Christodoulides, Robert James, A Ross Kerr, Martin H Thornhill, Spencer W Redding, Nadarajah Vigneswaran, Paul M Speight, Julie Vick and 23 more

Abstract read
In one paragraph

Article in Oral oncology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Review
  6. Application of artificial intelligence in oral potentially malignant disorders: current opinions and future barriers.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Review
  7. Review
  8. A cytomics-on-a-chip platform and diagnostic model stratifies risk for oral lichenoid conditions.Oral surgery, oral medicine, oral pathology and oral radiology · 2024
    Article
  9. A brief review of cytology in dentistry.British dental journal · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Timothy J AbramRice University, Department of Bioengineering, Houston, TX, USA.
Pierre N FlorianoNeoTherma Oncology, Houston, TX, USA.
Nicolaos ChristodoulidesRice University, Department of Bioengineering, Houston, TX, USA.
Robert JamesRho Inc., Chapel Hill, NC, USA.
A Ross KerrNew York University College of Dentistry, Department of Oral and Maxillofacial Pathology, Radiology & Medicine, New York, NY, USA.
Martin H ThornhillAcademic Unit of Oral & Maxillofacial Medicine & Surgery, University of Sheffield School of Clinical Dentistry, Sheffield, UK.
Spencer W ReddingThe University of Texas Health Science Center at San Antonio, Department of Comprehensive Dentistry and Cancer Therapy and Research Center, San Antonio, TX, USA.
Nadarajah VigneswaranThe University of Texas Health Science Center at Houston, Department of Diagnostic and Biomedical Sciences, Houston, TX, USA.
Paul M SpeightAcademic Unit of Oral & Maxillofacial Pathology, University of Sheffield School of Clinical Dentistry, Sheffield, UK.
Julie VickRho Inc., Chapel Hill, NC, USA.
Craig MurdochAcademic Unit of Oral & Maxillofacial Medicine & Surgery, University of Sheffield School of Clinical Dentistry, Sheffield, UK.
Christine FreemanAcademic Unit of Oral & Maxillofacial Medicine & Surgery, University of Sheffield School of Clinical Dentistry, Sheffield, UK.
Anne M HegartyUnit of Oral Medicine, Charles Clifford Dental Hospital, Sheffield Teaching Hospitals National Health Service Foundation Trust, Sheffield, UK.
Katy D'ApiceUnit of Oral Medicine, Charles Clifford Dental Hospital, Sheffield Teaching Hospitals National Health Service Foundation Trust, Sheffield, UK.
Joan A PhelanNew York University College of Dentistry, Department of Oral and Maxillofacial Pathology, Radiology & Medicine, New York, NY, USA.
Patricia M CorbyNew York University School of Medicine, Department of Population Health and Radiation Oncology, New York, NY, USA.
Ismael KhoulyNew York University College of Dentistry, Bluestone Center for Clinical Research, New York, NY, USA.
Jerry BouquotThe University of Texas Health Science Center at Houston, Department of Diagnostic and Biomedical Sciences, Houston, TX, USA.
Nagi M DemianThe University of Texas Health Science Center at Houston, Department of Oral and Maxillofacial Surgery, Houston, TX, USA.
Y Etan WeinstockThe University of Texas Health Science Center at Houston, Department of Otolaryngology-Head and Neck Surgery, Houston, TX, USA.
Stephanie RowanThe University of Texas Health Science Center at San Antonio, Department of Comprehensive Dentistry and Cancer Therapy and Research Center, San Antonio, TX, USA.
Chih-Ko YehThe University of Texas Health Science Center at San Antonio, Department of Comprehensive Dentistry and Cancer Therapy and Research Center, San Antonio, TX, USA; South Texas Veterans Health Care System, Geriatric Research, Education, and Clinical Center, San Antonio, TX, USA.
H Stan McGuffThe University of Texas Health Science Center at San Antonio, Department of Pathology, San Antonio, TX, USA.
Frank R MillerThe University of Texas Health Science Center at San Antonio, Department of Otolaryngology-Head and Neck Surgery and Cancer Therapy and Research Center, San Antonio, TX, USA.
Surabhi GaurRice University, Department of Bioengineering, Houston, TX, USA.
Kailash KarthikeyanRice University, Department of Bioengineering, Houston, TX, USA.
Leander TaylorRice University, Department of Bioengineering, Houston, TX, USA.
Cathy LeRice University, Department of Bioengineering, Houston, TX, USA.
Michael NguyenRice University, Department of Bioengineering, Houston, TX, USA.
Humberto TalaveraRice University, Department of Bioengineering, Houston, TX, USA.
Rameez RajaRice University, Department of Bioengineering, Houston, TX, USA.
Jorge WongRice University, Department of Bioengineering, Houston, TX, USA.
John T McDevittRice University, Department of Bioengineering, Houston, TX, USA; Rice University, Department of Chemistry, Houston, TX, USA; New York University, Department of Biomaterials, New York, NY, USA. Electronic address: mcdevitt@nyu.edu.

Funding

Institute for Integration of Medicine & Science: A Partnership to Improve HealthUL1TR001120 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A, HARGREAVES, KENNETH M · 2013 to 2017
$16.5M
Center for Clinical and Translational Sciences (CCTS)UL1TR000371 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MCPHERSON, DAVID D · 2012 to 2016
$13.4M
Monitoring of Oral Cancer Patients Using Novel Lab-on-a-Chip EnsemblesRC2DE020785 · NIDCR · RICE UNIVERSITY · PI MCDEVITT, JOHN T · 2009 to 2012
$3.5M
Lab-on-a-Chip-Based System for Detection and Monitoring of Oral Cancer in Dental SettingsR44DE025798 · NIDCR · SENSODX II, LLC · PI MCDEVITT, JOHN T, MEHALSO, ROBERT · 2016 to 2018
$1.7M
NCATS NIH HHS UL1 TR000371NCATS NIH HHS UL1 TR001120NIDCR NIH HHS R44 DE025798NIDCR NIH HHS RC2 DE020785
6 · The paper itself

Abstract

unlabelledDespite significant advances in surgical procedures and treatment, long-term prognosis for patients with oral cancer remains poor, with survival rates among the lowest of major cancers. Better methods are desperately needed to identify potential malignancies early when treatments are more effective.

objectiveTo develop robust classification models from cytology-on-a-chip measurements that mirror diagnostic performance of gold standard approach involving tissue biopsy. MATERIALS AND

methodsMeasurements were recorded from 714 prospectively recruited patients with suspicious lesions across 6 diagnostic categories (each confirmed by tissue biopsy -histopathology) using a powerful new 'cytology-on-a-chip' approach capable of executing high content analysis at a single cell level. Over 200 cellular features related to biomarker expression, nuclear parameters and cellular morphology were recorded per cell. By cataloging an average of 2000 cells per patient, these efforts resulted in nearly 13 million indexed objects.

resultsBinary "low-risk"/"high-risk" models yielded AUC values of 0.88 and 0.84 for training and validation models, respectively, with an accompanying difference in sensitivity+specificity of 6.2%. In terms of accuracy, this model accurately predicted the correct diagnosis approximately 70% of the time, compared to the 69% initial agreement rate of the pool of expert pathologists. Key parameters identified in these models included cell circularity, Ki67 and EGFR expression, nuclear-cytoplasmic ratio, nuclear area, and cell area.

conclusionsThis chip-based approach yields objective data that can be leveraged for diagnosis and management of patients with PMOL as well as uncovering new molecular-level insights behind cytological differences across the OED spectrum.

Indexed as

Lab-On-A-Chip DevicesAutomationBiopsyFemaleHumansMaleMonitoring, PhysiologicMouth NeoplasmsProspective StudiesCytologyHigh content analysisLASSOMachine learningMicrofluidicOral cancerOral epithelial dysplasiaRandom forest

Identifiers

PMID27531880
PMCPMC5056560

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.