ArticleScientific reports2016
Identifying the genetic diversity, genetic structure and a core collection of Ziziphus jujuba Mill. var. jujuba accessions using microsatellite markers.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Research Progress and Prospects of Molecular Marker Technology on Jujube Trees.Plants (Basel, Switzerland) · 2026Review
- Integrated Phenotypic, Cytotypic, and Microsatellite Diversity Analysis of Wild-Growing/Naturalized Ber (Plants (Basel, Switzerland) · 2026Article
- Development and application of core collection, KASP markers and SNP-based DNA fingerprinting inFrontiers in plant science · 2026Article
- Genetic structure analysis and core germplasm construction of Robinia pseudoacacia and its closely related species based on SNP.BMC plant biology · 2025Article
- Multiple-Genome-Based Simple Sequence Repeat Is an Efficient and Successful Method in Genotyping and Classifying Different Jujube Germplasm Resources.Plants (Basel, Switzerland) · 2023Article
- Molecular Characterization and Genetic Diversity of Ginkgo (Plants (Basel, Switzerland) · 2023Article
- Genotyping of Jujube (Plants (Basel, Switzerland) · 2023Article
- Genetic Diversity of Korean Wild Soybean Core Collections and Genome-Wide Association Study for Days to Flowering.Plants (Basel, Switzerland) · 2023Article
- Assessment of genetic diversity and population structure in wild Ziziphus species from northwest India using SSR marker technique.Journal, genetic engineering & biotechnology · 2023Article
- Uncovering the first complete plastome genomics, comparative analyses, and phylogenetic dispositions of endemic medicinal plant Ziziphus hajarensis (Rhamnaceae).BMC genomics · 2022Article
- Genome-wide association studies of fruit quality traits in jujube germplasm collections using genotyping-by-sequencing.The plant genome · 2020Article
- The genetic relationships of Indian jujube (Heliyon · 2020Article
- Constructing a Core Collection of the Medicinal PlantFrontiers in plant science · 2020Article
- The historical and current research progress on jujube-a superfruit for the future.Horticulture research · 2020Article
- Construction of an anchoring SSR marker genetic linkage map and detection of a sex-linked region in two dioecious populations of red bayberry.Horticulture research · 2020Article
- An Integrated Characterization of Jujube (Food technology and biotechnology · 2019Article
- Between domestication and civilization: the role of agriculture and arboriculture in the emergence of the first urban societies.Vegetation history and archaeobotany · 2019Article
- Korean soybean core collection: Genotypic and phenotypic diversity population structure and genome-wide association study.PloS one · 2019Article
- Genetic Diversity, Population Structure, and Linkage Disequilibrium of a Core Collection ofFrontiers in plant science · 2017Article
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7 authors.
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No grant is acknowledged in the PubMed record.
Abstract
Ziziphus is a genus of spiny shrubs and small trees in the Rhamnaceae family. This group has a controversial taxonomy, with more than 200 species described, including Chinese jujube (Ziziphus jujuba Mill. var. jujuba) and Indian jujube (Z. mauritiana), as well as several other important cultivated fruit crops. Using 24 SSR markers distributed across the Chinese jujube genome, 962 jujube accessions from the two largest germplasm repositories were genotyped with the aim of analyzing the genetic diversity and structure and constructing a core collection that retain high genetic diversity. A molecular profile comparison revealed 622 unique genotypes, among which 123 genotypes were genetically identical to at least one other accessions. STRUCTURE analysis and multivariate analyses (Cluster and PCoA) roughly divided the accessions into three major groups, with some admixture among groups. A simulated annealing algorithm and a heuristic algorithm were chosen to construct the core collection. A final core of 150 accessions was selected, comprising 15.6% of the analyzed accessions and retaining more than 99.5% of the total alleles detected. We found no significant differences in allele frequency distributions or in genetic diversity parameters between the chosen core accessions and the 622 genetically unique accessions. This work contributes to the understanding of Chinese jujube diversification and the protection of important germplasm resources.
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