Evidence map›Paper›PMID 27531195›Full record

ArticleScientific reports2016

Structural Investigation of Park's Nucleotide on Bacterial Translocase MraY: Discovery of Unexpected MraY Inhibitors.

Kuo-Ting Chen, Po-Ting Chen, Cheng-Kun Lin, Lin-Ya Huang, Chia-Ming Hu, Yi-Fan Chang, Hua-Ting Hsu, Ting-Jen R Cheng, Ying-Ta Wu, Wei-Chieh Cheng

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
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  5. Review
  6. Analysis of a dual domain phosphoglycosyl transferase reveals a ping-pong mechanism with a covalent enzyme intermediate.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Kuo-Ting ChenGenomics Research Center, Academia Sinica, No. 128 Academia Road, Section 2, Nankang District, Taipei, 11529, Taiwan.
Po-Ting ChenGenomics Research Center, Academia Sinica, No. 128 Academia Road, Section 2, Nankang District, Taipei, 11529, Taiwan.
Cheng-Kun LinGenomics Research Center, Academia Sinica, No. 128 Academia Road, Section 2, Nankang District, Taipei, 11529, Taiwan.
Lin-Ya HuangGenomics Research Center, Academia Sinica, No. 128 Academia Road, Section 2, Nankang District, Taipei, 11529, Taiwan.
Chia-Ming HuGenomics Research Center, Academia Sinica, No. 128 Academia Road, Section 2, Nankang District, Taipei, 11529, Taiwan.
Yi-Fan ChangGenomics Research Center, Academia Sinica, No. 128 Academia Road, Section 2, Nankang District, Taipei, 11529, Taiwan.
Hua-Ting HsuGenomics Research Center, Academia Sinica, No. 128 Academia Road, Section 2, Nankang District, Taipei, 11529, Taiwan.
Ting-Jen R ChengGenomics Research Center, Academia Sinica, No. 128 Academia Road, Section 2, Nankang District, Taipei, 11529, Taiwan.
Ying-Ta WuGenomics Research Center, Academia Sinica, No. 128 Academia Road, Section 2, Nankang District, Taipei, 11529, Taiwan.
Wei-Chieh ChengGenomics Research Center, Academia Sinica, No. 128 Academia Road, Section 2, Nankang District, Taipei, 11529, Taiwan.
Genomics Research Center, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Systematic structural modifications of the muramic acid, peptide, and nucleotide moieties of Park's nucleotide were performed to investigate the substrate specificity of B. subtilis MraY (MraYBS). It was found that the simplest analogue of Park's nucleotide only bearing the first two amino acids, l-alanine-iso-d-glutamic acid, could function as a MraYBS substrate. Also, the acid group attached to the Cα of iso-d-glutamic acid was found to play an important role for substrate activity. Epimerization of the C4-hydroxyl group of muramic acid and modification at the 5-position of the uracil in Park's nucleotide were both found to dramatically impair their substrate activity. Unexpectedly, structural modifications on the uracil moiety changed the parent molecule from a substrate to an inhibitor, blocking the MraYBS translocation. One unoptimized inhibitor was found to have a Ki value of 4 ± 1 μM against MraYBS, more potent than tunicamycins.

Indexed as

Anti-Bacterial AgentsBacillus subtilisBacterial ProteinsMicrobial Sensitivity TestsNucleic Acid ConformationNucleotidesStaphylococcus aureusSubstrate SpecificityTransferasesTransferases (Other Substituted Phosphate Groups)Anti-Bacterial AgentsBacterial ProteinsmraY protein, BacteriaNucleotidesTransferasesTransferases (Other Substituted Phosphate Groups)

Identifiers

PMID27531195
PMCPMC4987650
OpenAlexW2515354748

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.