Evidence map›Paper›PMID 27531052›Full record

ReviewSeminars in cell & developmental biology2017

Peromyscus transcriptomics: Understanding adaptation and gene expression plasticity within and between species of deer mice.

Jason Munshi-South, Jonathan L Richardson

Open access · greenAbstract readReview
In one paragraph

Review in Seminars in cell & developmental biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Biodefense Implications of New-World Hantaviruses.Frontiers in bioengineering and biotechnology · 2020
    Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Jason Munshi-SouthLouis Calder Center-Biological Field Station, Fordham University, 31 Whippoorwill Road, Armonk, NY 10504, USA. Electronic address: jmunshisouth@fordham.edu.
Jonathan L RichardsonProvidence College, 1 Cunningham Square, Providence, RI 02918, USA. Electronic address: jrichardson@providence.edu.
Fordham University · USProvidence College · US

Funding

Adaptive Evolutionary Responses of White-footed Mice (Peromyscus leucopus) to UrbR15GM099055 · NIGMS · FORDHAM UNIVERSITY · PI MUNSHI-SOUTH, JASON · 2012 to 2012
$293k
NIGMS NIH HHS R15 GM099055
6 · The paper itself

Abstract

Deer mice in the genus Peromyscus occupy nearly every terrestrial habitat in North America, and have a long history as subjects of behavioral, ecological, evolutionary, and physiological study. Recent advances in transcriptomics, the study of the complete set of RNA transcripts produced by certain cell types or under certain conditions, have contributed to the development of Peromyscus as a model system. We review the recent use of transcriptomics to investigate how natural selection and gene expression plasticity contribute to the existence of deer mice in challenging environments such as highlands, deserts, and cities across North America. Transcriptomics also holds great promise for elucidating the genetic basis of mating systems and other behaviors in Peromyscus, but has to date been underutilized for developmental biology and disease studies. Future Peromyscus studies should apply robust comparative frameworks to analyze the transcriptomics of multiple populations of the same species across varying environmental conditions, as well as multiple species that vary in traits of interest.

Indexed as

Gene Expression RegulationAdaptation, PhysiologicalAnimalsBehavior, AnimalGene Expression ProfilingPeromyscusSpecies SpecificityDeer miceEcological genomicsGene expressionPeromyscusRNA-SeqTranscriptome

Identifiers

PMID27531052
PMCPMC5235989
OpenAlexW2511852764

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.