Evidence map›Paper›PMID 27530615›Full record

ArticleBMC medical genetics2016

HABP2 germline variants are uncommon in familial nonmedullary thyroid cancer.

Alexia L Weeks, Scott G Wilson, Lynley Ward, Jack Goldblatt, Jennie Hui, John P Walsh

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Genetic susceptibility to hereditary non-medullary thyroid cancer.Hereditary cancer in clinical practice · 2022
    Review
  5. Review
  6. Article
  7. Familial non-medullary thyroid cancer: a critical review.Journal of endocrinological investigation · 2021
    Review
  8. Review
  9. BROX haploinsufficiency in familial nonmedullary thyroid cancer.Journal of endocrinological investigation · 2021
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Genes · 2019
    Article
  15. Article
  16. Article
  17. The p.G534E variant ofOncotarget · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Alexia L WeeksDepartment of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, 6009, Australia.
Scott G WilsonDepartment of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, 6009, Australia.
Lynley WardDepartment of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, 6009, Australia.
Jack GoldblattGenetic Services of Western Australia, King Edward Memorial Hospital, Subiaco, WA, 6008, Australia.
Jennie HuiPathwest Laboratory Medicine WA, Nedlands, WA, 6009, Australia.
John P WalshDepartment of Endocrinology & Diabetes, Sir Charles Gairdner Hospital, Nedlands, WA, 6009, Australia. john.walsh@health.wa.gov.au.
University of Western Australia · AUSir Charles Gairdner Hospital · AUKing Edward Memorial Hospital · AU

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundThe genetic basis of nonsyndromic familial nonmedullary thyroid cancer (FNMTC) is poorly understood. A recent study identified HABP2 as a tumor suppressor gene and identified a germline variant (G534E) in an extended FNMTC kindred. The relevance of this to other FNMTC kindreds is uncertain.

methodsSanger sequencing was performed on peripheral blood DNA from probands from 37 Australian FNMTC kindreds to detect the G534E variant. Whole exome data from 59 participants from 20 kindreds were examined for mutations in HABP2 and the thyroid cancer susceptibility genes SRGAP1, NKX2-1, SRRM2 and FOXE1. The population prevalence of the G534E variant in HABP2 was examined in two independent cohorts.

resultsHeterozygosity for the G534E variant in HABP2 was found in 1 of 37 probands (2.7 %), but did not cosegregate with disease in this kindred, being absent in the proband's affected sister. From whole exome data, pathogenic mutations were not identified in HABP2, SRGAP1, NKX2-1, SRRM2 or FOXE1. Heterozygosity for the G534E variant in HABP2 was present in 7.6 % of Busselton Health Study participants (N = 4634, unknown disease status) and 9.3 % of TwinsUK participants (N = 1195, no history of thyroid cancer).

conclusionsThe G534E variant in HABP2 does not account for the familial nature of NMTC in Australian kindreds, and is common in the general population. Further research is required to elucidate the genetic basis of nonsyndromic FNMTC.

Indexed as

Germ-Line MutationAdultAustraliaCarcinomaCarcinoma, PapillaryFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHumansMaleMiddle AgedSequence Analysis, DNASerine EndopeptidasesThyroid Cancer, PapillaryThyroid NeoplasmsHABP2 protein, humanSerine EndopeptidasesHABP2OncogenesPapillary thyroid cancerThyroid carcinoma

Identifiers

PMID27530615
PMCPMC4988026
OpenAlexW2515428679

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.