Evidence map›Paper›PMID 27530597›Full record

ArticleScientific reports2016

SNP-based high density genetic map and mapping of btwd1 dwarfing gene in barley.

Xifeng Ren, Jibin Wang, Lipan Liu, Genlou Sun, Chengdao Li, Hong Luo, Dongfa Sun

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Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

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14citing papers in PubMed
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1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  7. When less can be better: How can we make genomic selection more cost-effective and accurate in barley?TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Xifeng RenCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Jibin WangCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Lipan LiuCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Genlou SunBiology Department, Saint Mary's University, 923 Robie Street, Halifax, NS, B3H3C3, Canada.
Chengdao LiDepartment of Agriculture &Food/Agricultural Research Western Australia, 3 Baron-Hay Court, South Perth, WA 6155, Australia.
Hong LuoCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Dongfa SunCollege of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A high-density linkage map is a valuable tool for functional genomics and breeding. A newly developed sequence-based marker technology, restriction site associated DNA (RAD) sequencing, has been proven to be powerful for the rapid discovery and genotyping of genome-wide single nucleotide polymorphism (SNP) markers and for the high-density genetic map construction. The objective of this research was to construct a high-density genetic map of barley using RAD sequencing. 1894 high-quality SNP markers were developed and mapped onto all seven chromosomes together with 68 SSR markers. These 1962 markers constituted a total genetic length of 1375.8 cM and an average of 0.7 cM between adjacent loci. The number of markers within each linkage group ranged from 209 to 396. The new recessive dwarfing gene btwd1 in Huaai 11 was mapped onto the high density linkage maps. The result showed that the btwd1 is positioned between SNP marks 7HL_6335336 and 7_249275418 with a genetic distance of 0.9 cM and 0.7 cM on chromosome 7H, respectively. The SNP-based high-density genetic map developed and the dwarfing gene btwd1 mapped in this study provide critical information for position cloning of the btwd1 gene and molecular breeding of barley.

Indexed as

Chromosome MappingGenes, PlantGenes, RecessivePolymorphism, Single NucleotideChromosomes, PlantGenome-Wide Association StudyHordeum

Identifiers

PMID27530597
PMCPMC4987670

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.