ArticleScientific reports2016
The two chromosomes of the mitochondrial genome of a sugarcane cultivar: assembly and recombination analysis using long PacBio reads.
Article in Scientific reports, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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44 citing papers in PubMed.
- Assembly and comparative analysis of the complete mitochondrial genome of the Maclura tricuspidata.BMC genomics · 2026Article
- Near-complete genome assembly of allotetraploid Erianthus rockii reveals unique chromosome evolution and lineage-divergence trajectories in the Saccharum complex.Plant communications · 2025Article
- Mitogenome of Uncaria rhynchophylla: genome structure, characterization, and phylogenetic relationships.BMC genomics · 2025Article
- Mitochondrial genome structural variants and candidate cytoplasmic male sterility-related gene in sugarcane.BMC genomics · 2025Article
- Characterization of the complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2025Article
- Identification of male sterility-related genes in Saccharum officinarum and Saccharum spontaneum.Plant reproduction · 2024Article
- Assembly and comparative analysis of the complete multichromosomal mitochondrial genome of Cymbidium ensifolium, an orchid of high economic and ornamental value.BMC plant biology · 2024Article
- Mitochondrial genome features and systematic evolution of diospyros kaki thunb 'Taishuu'.BMC genomics · 2024Article
- The first two whole mitochondrial genomes for the genus Dactylis species: assembly and comparative genomics analysis.BMC genomics · 2024Article
- Decoding the complete organelle genomic architecture of Stewartia gemmata: an early-diverging species in Theaceae.BMC genomics · 2024Article
- What we know so far and what we can expect next: A molecular investigation of plant parasitism.Genetics and molecular biology · 2024Article
- The Mitochondrial Genome of the Holoparasitic Plant Thonningia sanguinea Provides Insights into the Evolution of the Multichromosomal Structure.Genome biology and evolution · 2023Article
- Worldwide Population Genomics Reveal Long-Term Stability of the Mitochondrial Genome Architecture in a Keystone Marine Plant.Genome biology and evolution · 2023Article
- Complete mitochondrial genome of Agrostis stolonifera: insights into structure, Codon usage, repeats, and RNA editing.BMC genomics · 2023Article
- Single-molecule Sequencing of an Animal Mitochondrial Genome Reveals Chloroplast-like Architecture and Repeat-mediated Recombination.Molecular biology and evolution · 2023Article
- Comprehensive analysis of the complete mitochondrial genomes of threeFrontiers in plant science · 2023Article
- Complete mitochondrial genome assembly and comparison ofFrontiers in plant science · 2023Article
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- Towards defining the core Saccharum microbiome: input from five genotypes.BMC microbiology · 2022Article
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sugarcane accounts for a large portion of the worlds sugar production. Modern commercial cultivars are complex hybrids of S. officinarum and several other Saccharum species. Historical records identify New Guinea as the origin of S. officinarum and that a small number of plants originating from there were used to generate all modern commercial cultivars. The mitochondrial genome can be a useful way to identify the maternal origin of commercial cultivars. We have used the PacBio RSII to sequence and assemble the mitochondrial genome of a South East Asian commercial cultivar, known as Khon Kaen 3. The long read length of this sequencing technology allowed for the mitochondrial genome to be assembled into two distinct circular chromosomes with all repeat sequences spanned by individual reads. Comparison of five commercial hybrids, two S. officinarum and one S. spontaneum to our assembly reveals no structural rearrangements between our assembly, the commercial hybrids and an S. officinarum from New Guinea. The S. spontaneum, from India, and one sample of S. officinarum (unknown origin) are substantially rearranged and have a large number of homozygous variants. This supports the record that S. officinarum plants from New Guinea are the maternal source of all modern commercial hybrids.
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