Evidence map›Paper›PMID 27529540›Full record

ArticleScientific data2016

Multi-omics profile of the mouse dentate gyrus after kainic acid-induced status epilepticus.

Marijn Schouten, Pascal Bielefeld, Silvina A Fratantoni, Chantal J Hubens, Sander R Piersma, Thang V Pham, Rob A Voskuyl, Paul J Lucassen, Connie R Jimenez, Carlos P Fitzsimons

Open access · goldAbstract readComment
In one paragraph

Article in Scientific data, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Marijn SchoutenNeuroscience Program, Swammerdam Institute for Life Sciences, Faculty of Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098XH, The Netherlands.
Pascal BielefeldNeuroscience Program, Swammerdam Institute for Life Sciences, Faculty of Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098XH, The Netherlands.
Silvina A FratantoniOncoproteomics Laboratory, Cancer Center, Free University Amsterdam, De Boelelaan 1117, Amsterdam 1081HV, The Netherlands.
Chantal J HubensDivision of Pharmacology, LACDR, Leiden University, Einsteinweg 55, Leiden 2333 CC, The Netherlands.
Sander R PiersmaOncoproteomics Laboratory, Cancer Center, Free University Amsterdam, De Boelelaan 1117, Amsterdam 1081HV, The Netherlands.
Thang V PhamOncoproteomics Laboratory, Cancer Center, Free University Amsterdam, De Boelelaan 1117, Amsterdam 1081HV, The Netherlands.
Rob A VoskuylDivision of Pharmacology, LACDR, Leiden University, Einsteinweg 55, Leiden 2333 CC, The Netherlands.
Paul J LucassenNeuroscience Program, Swammerdam Institute for Life Sciences, Faculty of Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098XH, The Netherlands.
Connie R JimenezOncoproteomics Laboratory, Cancer Center, Free University Amsterdam, De Boelelaan 1117, Amsterdam 1081HV, The Netherlands.
Carlos P FitzsimonsNeuroscience Program, Swammerdam Institute for Life Sciences, Faculty of Sciences, University of Amsterdam, Science Park 904, Amsterdam 1098XH, The Netherlands.ORCID http://orcid.org/0000-0002-1556-2650
Netherlands Institute for Neuroscience · NLOncode Institute · NLLeiden University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Temporal lobe epilepsy (TLE) can develop from alterations in hippocampal structure and circuit characteristics, and can be modeled in mice by administration of kainic acid (KA). Adult neurogenesis in the dentate gyrus (DG) contributes to hippocampal functions and has been reported to contribute to the development of TLE. Some of the phenotypical changes include neural stem and precursor cells (NPSC) apoptosis, shortly after their birth, before they produce hippocampal neurons. Here we explored these early phenotypical changes in the DG 3 days after a systemic injection of KA inducing status epilepticus (KA-SE), in mice. We performed a multi-omics experimental setup and analyzed DG tissue samples using proteomics, transcriptomics and microRNA profiling techniques, detecting the expression of 2327 proteins, 13401 mRNAs and 311 microRNAs. We here present a description of how these data were obtained and make them available for further analysis and validation. Our data may help to further identify and characterize molecular mechanisms involved in the alterations induced shortly after KA-SE in the mouse DG.

Indexed as

Kainic AcidAnimalsDentate GyrusEpilepsy, Temporal LobeHippocampusMiceStatus EpilepticusKainic Acid

Identifiers

PMID27529540
PMCPMC4986542
OpenAlexW2516645296

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.