Evidence map›Paper›PMID 27529479›Full record

ArticlePLoS neglected tropical diseases2016

Population Genetic Analysis Reveals a High Genetic Diversity in the Brazilian Cryptococcus gattii VGII Population and Shifts the Global Origin from the Amazon Rainforest to the Semi-arid Desert in the Northeast of Brazil.

Ana C P Souto, Lucas X Bonfietti, Kennio Ferreira-Paim, Luciana Trilles, Marilena Martins, Marcelo Ribeiro-Alves, Cau D Pham, Liline Martins, Wallace Dos Santos, Marilene Chang and 8 more

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Cryptococcus spp. and Cryptococcosis: focusing on the infection in Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Review
  10. Article
  11. Article
  12. Article
  13. Central Nervous System Cryptococcosis due toCurrent tropical medicine reports · 2022
    Review
  14. Journal of fungi (Basel, Switzerland) · 2021
    Article
  15. Article
  16. Journal of fungi (Basel, Switzerland) · 2021
    Review
  17. Cryptococcal meningitis in non-HIV patients in the State of Amazonas, Northern Brazil.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Ana C P SoutoEvandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.
Lucas X BonfiettiInstitute Adolfo Lutz, São Paulo, Brazil.
Kennio Ferreira-PaimMolecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Marie Bashir Institute for Emerging Infectious Diseases and Biosecurity, Sydney Medical School-Westmead Hospital, The University of Sydney, The Westmead Institute for Medical Research, Sydney, Australia.
Luciana TrillesEvandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.
Marilena MartinsInstitute Adolfo Lutz, São Paulo, Brazil.
Marcelo Ribeiro-AlvesEvandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.
Cau D PhamCenters for Disease Control and Prevention, Atlanta, United States of America.
Liline MartinsUniversity of Piauí State, Teresina, Brazil.
Wallace Dos SantosEvandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.
Marilene ChangFederal University of Mato Grosso do Sul, Campo Grande, Brazil.
Fabio Brito-SantosEvandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.
Dayane C S SantosInstitute Adolfo Lutz, São Paulo, Brazil.
Silvana FortesBiodiversity Research Center, Federal University of Roraima, Boa Vista, Brazil.
Shawn R LockhartCenters for Disease Control and Prevention, Atlanta, United States of America.
Bodo WankeEvandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.
Márcia S C MelhemInstitute Adolfo Lutz, São Paulo, Brazil.
Márcia S LazéraEvandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.
Wieland MeyerEvandro Chagas National Institute of Infectious Diseases, Oswaldo Cruz Foundation, Rio de Janeiro, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryptococcus neoformans and Cryptococcus gattii are responsible globally for almost one million cryptococcosis cases yearly, mostly in immunocompromised patients, such as those living with HIV. Infections due to C. gattii have mainly been described in tropical and subtropical regions, but its adaptation to temperate regions was crucial in the species evolution and highlighted the importance of this pathogenic yeast in the context of disease. Cryptococcus gattii molecular type VGII has come to the forefront in connection with an on-going emergence in the Pacific North West of North America. Taking into account that previous work pointed towards South America as an origin of this species, the present work aimed to assess the genetic diversity within the Brazilian C. gattii VGII population in order to gain new insights into its origin and global dispersal from the South American continent using the ISHAM consensus MLST typing scheme. Our results corroborate the finding that the Brazilian C. gattii VGII population is highly diverse. The diversity is likely due to recombination generated from sexual reproduction, as evidenced by the presence of both mating types in clinical and environmental samples. The data presented herein strongly supports the emergence of highly virulent strains from ancestors in the Northern regions of Brazil, Amazonia and the Northeast. Numerous genotypes represent a link between Brazil and other parts of the world reinforcing South America as the most likely origin of the C. gattii VGII subtypes and their subsequent global spread, including their dispersal into North America, where they caused a major emergence.

Indexed as

Genetic VariationBiological EvolutionBrazilCryptococcosisCryptococcus gattiiCryptococcus neoformansGenotypeHumansMultilocus Sequence TypingMycological Typing TechniquesNorth AmericaPhylogeographyRainforestRecombination, GeneticSouth America

Identifiers

PMID27529479
PMCPMC4986980

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.