Evidence map›Paper›PMID 27528619›Full record

ArticleMolecular and cellular biology2016

Xist and Tsix Transcription Dynamics Is Regulated by the X-to-Autosome Ratio and Semistable Transcriptional States.

Friedemann Loos, Cheryl Maduro, Agnese Loda, Johannes Lehmann, Gert-Jan Kremers, Derk Ten Berge, J Anton Grootegoed, Joost Gribnau

Open access · hybridAbstract read
In one paragraph

Article in Molecular and cellular biology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. The Molecular and Nuclear Dynamics of X-Chromosome Inactivation.Cold Spring Harbor perspectives in biology · 2022
    Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Escape From X-Chromosome Inactivation: An Evolutionary Perspective.Frontiers in cell and developmental biology · 2019
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Friedemann LoosDepartment of Developmental Biology, Erasmus MC, University Medical Center, Rotterdam, The Netherlands.
Cheryl MaduroDepartment of Developmental Biology, Erasmus MC, University Medical Center, Rotterdam, The Netherlands.
Agnese LodaDepartment of Developmental Biology, Erasmus MC, University Medical Center, Rotterdam, The Netherlands.
Johannes LehmannErasmus MC Stem Cell Institute, Erasmus MC, University Medical Center, Rotterdam, The Netherlands.
Gert-Jan KremersOptical Imaging Center, Erasmus MC, University Medical Center, Rotterdam, The Netherlands.
Derk Ten BergeErasmus MC Stem Cell Institute, Erasmus MC, University Medical Center, Rotterdam, The Netherlands.
J Anton GrootegoedDepartment of Developmental Biology, Erasmus MC, University Medical Center, Rotterdam, The Netherlands.
Joost GribnauDepartment of Developmental Biology, Erasmus MC, University Medical Center, Rotterdam, The Netherlands j.gribnau@erasmusmc.nl.
Erasmus MC · NLErasmus MC Cancer Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In female mammals, X chromosome inactivation (XCI) is a key process in the control of gene dosage compensation between X-linked genes and autosomes. Xist and Tsix, two overlapping antisense-transcribed noncoding genes, are central elements of the X inactivation center (Xic) regulating XCI. Xist upregulation results in the coating of the entire X chromosome by Xist RNA in cis, whereas Tsix transcription acts as a negative regulator of Xist Here, we generated Xist and Tsix reporter mouse embryonic stem (ES) cell lines to study the genetic and dynamic regulation of these genes upon differentiation. Our results revealed mutually antagonistic roles for Tsix on Xist and vice versa and indicate the presence of semistable transcriptional states of the Xic locus predicting the outcome of XCI. These transcriptional states are instructed by the X-to-autosome ratio, directed by regulators of XCI, and can be modulated by tissue culture conditions.

Indexed as

Transcription, GeneticAllelesAnimalsCell LineChromosomes, MammalianFemaleGene Expression RegulationGene Regulatory NetworksGenes, ReporterGenetic LociMiceModels, GeneticRNA, Long NoncodingX ChromosomeX Chromosome InactivationRNA, Long NoncodingTsix transcript, mouseXIST non-coding RNA

Identifiers

PMID27528619
PMCPMC5064214
OpenAlexW2517526273

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.